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annotate tool-data/kraken_databases.loc.sample @ 9:8ddbdc9cdc57 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
author iuc
date Tue, 03 Dec 2019 18:30:40 +0000
parents 8bbf903bf0cb
children
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9
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
1 # Expect three columns, tab separated, as follows:
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
2 # - value (Galaxy records this in the Galaxy DB)
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
3 # - name (Galaxy shows this in the UI)
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
4 # - path (folder name containing the Kraken DB)
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
5 #
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
6 # e.g.
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
7 # plants2018<tab>Plant genomes (2018)<tab>/path/to/krakenDB/plants_2018
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
8 #
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
9 # For backward compatibility the Kraken wrapper also accepts:
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
10 # - value (Galaxy records this in the Galaxy DB)
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
11 # - name (Final part of folder name, Galaxy shows this in the UI)
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
12 # - path (Parent folder name, where $path/$name contains the Kraken DB)
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
13 #
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
14 # e.g.
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
15 # plants2018<tab>plants_2018<tab>/path/to/krakenDB
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
16 #
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
17 # Please avoid this legacy usage, as not all tools using
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
parents: 0
diff changeset
18 # the kraken_databases.loc file will understand it.