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annotate test-data/kraken-report/test_database.loc @ 9:8ddbdc9cdc57 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
author iuc
date Tue, 03 Dec 2019 18:30:40 +0000
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8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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1 # Tab separated with three columns:
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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2 # - value (Galaxy records this in the Galaxy DB)
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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3 # - name (Galaxy shows this in the UI)
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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4 # - path (folder name containing the Kraken DB)
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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5 #
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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6 # Modern usage assumes $path is the folder containing
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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7 # the Kraken database of interest:
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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8 #
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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9 new_style_test_entry "Test Database" ${__HERE__}/test_db
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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10
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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11 # The kraken wrapper still supports an alternative
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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12 # legacy usage where $path/$name is the folder
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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13 # containing the Kraken database of interest, meaning
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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14 # $name must be both a folder name and human readable
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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15 # description of the DB to show in the Galaxy UI:
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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16 old_style_test_entry test_db ${__HERE__}
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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18 # NOTE: This legacy style should be avoided as other
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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19 # tools also using the kraken_database.loc file may
8ddbdc9cdc57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
iuc
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20 # not understand it!