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annotate macros.xml @ 4:9709eedcff4b draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 19:41:35 -0500
parents bb3d55e8ef3d
children e9e42bf5c6a8
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1 <?xml version="1.0"?>
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2 <macros>
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3 <xml name="requirements">
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4 <requirements>
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5 <requirement type="package" version="0.10.5">kraken</requirement>
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6 </requirements>
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7 </xml>
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8 <xml name="stdio">
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9 <stdio>
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10 <exit_code description="Tool exception" level="fatal" range="1:" />
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11 </stdio>
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12 </xml>
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13 <xml name="version_command">
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14 <version_command>export LC_ALL=C &amp;&amp; kraken --version</version_command>
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15 </xml>
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16 <xml name="input_database">
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17 <param label="Select a Kraken database" name="kraken_database" type="select">
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18 <options from_data_table="kraken_databases">
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19 <validator message="No databases are available built-in" type="no_options" />
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20 </options>
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21 </param>
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22 </xml>
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23 <xml name="citations">
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24 <citations>
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25 <citation type="doi">10.1186/gb-2014-15-3-r46</citation>
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26 </citations>
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27 </xml>
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bb3d55e8ef3d planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit cb1743eafd4ca98be0148d557770ef8635cc8d4c-dirty
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28 <token name="@INPUT_DATABASE@">--db ${kraken_database.fields.name}</token>
bb3d55e8ef3d planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit cb1743eafd4ca98be0148d557770ef8635cc8d4c-dirty
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29 <token name="@SET_DATABASE_PATH@">export KRAKEN_DB_PATH="${kraken_database.fields.path}"</token>
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30 </macros>