Mercurial > repos > devteam > kraken_filter
annotate macros.xml @ 3:7fb926851f66 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_filter/ commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author | devteam |
---|---|
date | Fri, 18 Dec 2015 19:41:19 -0500 |
parents | f093ba52debe |
children | d2c12af1943a |
rev | line source |
---|---|
0 | 1 <?xml version="1.0"?> |
2 <macros> | |
3 <xml name="requirements"> | |
4 <requirements> | |
5 <requirement type="package" version="0.10.5">kraken</requirement> | |
6 </requirements> | |
7 </xml> | |
8 <xml name="stdio"> | |
9 <stdio> | |
10 <exit_code description="Tool exception" level="fatal" range="1:" /> | |
11 </stdio> | |
12 </xml> | |
13 <xml name="version_command"> | |
14 <version_command>export LC_ALL=C && kraken --version</version_command> | |
15 </xml> | |
16 <xml name="input_database"> | |
17 <param label="Select a Kraken database" name="kraken_database" type="select"> | |
18 <options from_data_table="kraken_databases"> | |
19 <validator message="No databases are available built-in" type="no_options" /> | |
20 </options> | |
21 </param> | |
22 </xml> | |
23 <xml name="citations"> | |
24 <citations> | |
25 <citation type="doi">10.1186/gb-2014-15-3-r46</citation> | |
26 </citations> | |
27 </xml> | |
1
f093ba52debe
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_filter/ commit cb1743eafd4ca98be0148d557770ef8635cc8d4c-dirty
devteam
parents:
0
diff
changeset
|
28 <token name="@INPUT_DATABASE@">--db ${kraken_database.fields.name}</token> |
f093ba52debe
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_filter/ commit cb1743eafd4ca98be0148d557770ef8635cc8d4c-dirty
devteam
parents:
0
diff
changeset
|
29 <token name="@SET_DATABASE_PATH@">export KRAKEN_DB_PATH="${kraken_database.fields.path}"</token> |
0 | 30 </macros> |