Mercurial > repos > devteam > hgv_hilbertvis
changeset 1:de1d3f4e5277 draft
Uploaded updated tarball with tool dependency definition.
| author | devteam |
|---|---|
| date | Wed, 21 Aug 2013 13:06:25 -0400 |
| parents | 6f6859904b65 |
| children | e545f2d6795d |
| files | hilbertvis.xml tool_dependencies.xml |
| diffstat | 2 files changed, 13 insertions(+), 1 deletions(-) [+] |
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--- a/hilbertvis.xml Tue Aug 20 10:57:23 2013 -0400 +++ b/hilbertvis.xml Wed Aug 21 13:06:25 2013 -0400 @@ -1,6 +1,9 @@ <tool id="hgv_hilbertvis" name="HVIS" version="1.0.0"> <description>visualization of genomic data with the Hilbert curve</description> - + <requirements> + <requirement type="package" version="2.11.0">R</requirement> + <requirement type="package" version="1.18.0">bioc_hilbertvis</requirement> + </requirements> <command interpreter="bash"> hilbertvis.sh $input $output $chromInfo "$chrom" $plot_value.score_col $level $mode #if isinstance( $input.datatype, $__app__.datatypes_registry.get_datatype_by_extension('gff').__class__)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Wed Aug 21 13:06:25 2013 -0400 @@ -0,0 +1,9 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="R" version="2.11.0"> + <repository changeset_revision="df2d1c96d0e9" name="package_r_2_11_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="bioc_hilbertvis" version="1.18.0"> + <repository changeset_revision="258868f6a43d" name="package_bioc_hilbertvis_1_18_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>