Mercurial > repos > devteam > gffread
comparison test-data/Homo_sapiens.GRCh37_19.71.gff3 @ 0:baeea9c2ff0f draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/gffread commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
| author | devteam |
|---|---|
| date | Mon, 09 Nov 2015 12:06:36 -0500 |
| parents | |
| children | 0cf496c45054 |
comparison
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deleted
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| -1:000000000000 | 0:baeea9c2ff0f |
|---|---|
| 1 # gffread test-data/Homo_sapiens.GRCh37_19.71.gtf -o test-data/Homo_sapiens.GRCh37_19.71.gff3 | |
| 2 ##gff-version 3 | |
| 3 19 snRNA transcript 223158 223261 . - . ID=ENST00000410397;geneID=ENSG00000222329;gene_name=U6 | |
| 4 19 snRNA exon 223158 223261 . - . Parent=ENST00000410397 | |
| 5 19 unprocessed_pseudogene transcript 229640 230165 . - . ID=ENST00000587910;geneID=ENSG00000267600;gene_name=AC098474.1 | |
| 6 19 unprocessed_pseudogene exon 229640 229709 . - . Parent=ENST00000587910 | |
| 7 19 unprocessed_pseudogene exon 230084 230165 . - . Parent=ENST00000587910 | |
| 8 19 processed_pseudogene transcript 239145 239247 . - . ID=ENST00000588755;geneID=ENSG00000267305;gene_name=CTD-3113P16.7 | |
| 9 19 processed_pseudogene exon 239145 239247 . - . Parent=ENST00000588755 | |
| 10 19 processed_pseudogene transcript 279495 280170 . + . ID=ENST00000589981;geneID=ENSG00000267447;gene_name=VN2R11P | |
| 11 19 processed_pseudogene exon 279495 280170 . + . Parent=ENST00000589981 | |
| 12 19 protein_coding mRNA 281043 291386 . - . ID=ENST00000269812;geneID=ENSG00000141934;gene_name=PPAP2C | |
| 13 19 protein_coding exon 281043 281537 . - . Parent=ENST00000269812 | |
| 14 19 protein_coding exon 282134 282310 . - . Parent=ENST00000269812 | |
| 15 19 protein_coding exon 282752 282809 . - . Parent=ENST00000269812 | |
| 16 19 protein_coding exon 287474 287751 . - . Parent=ENST00000269812 | |
| 17 19 protein_coding exon 288020 288171 . - . Parent=ENST00000269812 | |
| 18 19 protein_coding exon 291285 291386 . - . Parent=ENST00000269812 | |
| 19 19 protein_coding CDS 281391 281537 . - 0 Parent=ENST00000269812 | |
| 20 19 protein_coding CDS 282134 282310 . - 0 Parent=ENST00000269812 | |
| 21 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000269812 | |
| 22 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000269812 | |
| 23 19 protein_coding CDS 288020 288171 . - 2 Parent=ENST00000269812 | |
| 24 19 protein_coding CDS 291285 291336 . - 0 Parent=ENST00000269812 | |
| 25 19 protein_coding mRNA 281345 291393 . - . ID=ENST00000434325;geneID=ENSG00000141934;gene_name=PPAP2C | |
| 26 19 protein_coding exon 281345 281537 . - . Parent=ENST00000434325 | |
| 27 19 protein_coding exon 282134 282310 . - . Parent=ENST00000434325 | |
| 28 19 protein_coding exon 282752 282809 . - . Parent=ENST00000434325 | |
| 29 19 protein_coding exon 287474 287751 . - . Parent=ENST00000434325 | |
| 30 19 protein_coding exon 288020 288171 . - . Parent=ENST00000434325 | |
| 31 19 protein_coding exon 291326 291393 . - . Parent=ENST00000434325 | |
| 32 19 protein_coding CDS 281391 281537 . - 0 Parent=ENST00000434325 | |
| 33 19 protein_coding CDS 282134 282310 . - 0 Parent=ENST00000434325 | |
| 34 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000434325 | |
| 35 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000434325 | |
| 36 19 protein_coding CDS 288020 288055 . - 0 Parent=ENST00000434325 | |
| 37 19 protein_coding mRNA 281388 291200 . - . ID=ENST00000327790;geneID=ENSG00000141934;gene_name=PPAP2C | |
| 38 19 protein_coding exon 281388 281537 . - . Parent=ENST00000327790 | |
| 39 19 protein_coding exon 282134 282310 . - . Parent=ENST00000327790 | |
| 40 19 protein_coding exon 282752 282809 . - . Parent=ENST00000327790 | |
| 41 19 protein_coding exon 287474 287751 . - . Parent=ENST00000327790 | |
| 42 19 protein_coding exon 288020 288171 . - . Parent=ENST00000327790 | |
| 43 19 protein_coding exon 290952 291200 . - . Parent=ENST00000327790 | |
| 44 19 protein_coding CDS 281391 281537 . - 0 Parent=ENST00000327790 | |
| 45 19 protein_coding CDS 282134 282310 . - 0 Parent=ENST00000327790 | |
| 46 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000327790 | |
| 47 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000327790 | |
| 48 19 protein_coding CDS 288020 288171 . - 2 Parent=ENST00000327790 | |
| 49 19 protein_coding CDS 290952 291066 . - 0 Parent=ENST00000327790 | |
| 50 19 protein_coding mRNA 281991 287636 . - . ID=ENST00000586998;geneID=ENSG00000141934;gene_name=PPAP2C | |
| 51 19 protein_coding exon 281991 282310 . - . Parent=ENST00000586998 | |
| 52 19 protein_coding exon 282752 282809 . - . Parent=ENST00000586998 | |
| 53 19 protein_coding exon 287474 287636 . - . Parent=ENST00000586998 | |
| 54 19 protein_coding CDS 282125 282310 . - 0 Parent=ENST00000586998 | |
| 55 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000586998 | |
| 56 19 protein_coding CDS 287474 287636 . - 2 Parent=ENST00000586998 | |
| 57 19 retained_intron transcript 287161 288530 . - . ID=ENST00000589672;geneID=ENSG00000141934;gene_name=PPAP2C | |
| 58 19 retained_intron exon 287161 287751 . - . Parent=ENST00000589672 | |
| 59 19 retained_intron exon 288020 288530 . - . Parent=ENST00000589672 | |
| 60 19 protein_coding mRNA 287474 291382 . - . ID=ENST00000591572;geneID=ENSG00000141934;gene_name=PPAP2C | |
| 61 19 protein_coding exon 287474 287751 . - . Parent=ENST00000591572 | |
| 62 19 protein_coding exon 288020 288189 . - . Parent=ENST00000591572 | |
| 63 19 protein_coding exon 291285 291382 . - . Parent=ENST00000591572 | |
| 64 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000591572 | |
| 65 19 protein_coding CDS 288020 288189 . - 2 Parent=ENST00000591572 | |
| 66 19 protein_coding CDS 291285 291336 . - 0 Parent=ENST00000591572 | |
| 67 19 antisense transcript 305573 306467 . + . ID=ENST00000591533;geneID=ENSG00000267124;gene_name=CTD-3113P16.5 | |
| 68 19 antisense exon 305573 305703 . + . Parent=ENST00000591533 | |
| 69 19 antisense exon 306057 306467 . + . Parent=ENST00000591533 | |
| 70 19 protein_coding mRNA 305575 344793 . - . ID=ENST00000264819;geneID=ENSG00000105556;gene_name=MIER2 | |
| 71 19 protein_coding exon 305575 306711 . - . Parent=ENST00000264819 | |
| 72 19 protein_coding exon 307119 307536 . - . Parent=ENST00000264819 | |
| 73 19 protein_coding exon 308577 308665 . - . Parent=ENST00000264819 | |
| 74 19 protein_coding exon 308801 308925 . - . Parent=ENST00000264819 | |
| 75 19 protein_coding exon 311845 311939 . - . Parent=ENST00000264819 | |
| 76 19 protein_coding exon 312191 312272 . - . Parent=ENST00000264819 | |
| 77 19 protein_coding exon 313492 313643 . - . Parent=ENST00000264819 | |
| 78 19 protein_coding exon 325635 325704 . - . Parent=ENST00000264819 | |
| 79 19 protein_coding exon 326507 326598 . - . Parent=ENST00000264819 | |
| 80 19 protein_coding exon 327133 327256 . - . Parent=ENST00000264819 | |
| 81 19 protein_coding exon 327864 327989 . - . Parent=ENST00000264819 | |
| 82 19 protein_coding exon 334400 334542 . - . Parent=ENST00000264819 | |
| 83 19 protein_coding exon 336083 336173 . - . Parent=ENST00000264819 | |
| 84 19 protein_coding exon 344774 344793 . - . Parent=ENST00000264819 | |
| 85 19 protein_coding CDS 306693 306711 . - 1 Parent=ENST00000264819 | |
| 86 19 protein_coding CDS 307119 307536 . - 2 Parent=ENST00000264819 | |
| 87 19 protein_coding CDS 308577 308665 . - 1 Parent=ENST00000264819 | |
| 88 19 protein_coding CDS 308801 308925 . - 0 Parent=ENST00000264819 | |
| 89 19 protein_coding CDS 311845 311939 . - 2 Parent=ENST00000264819 | |
| 90 19 protein_coding CDS 312191 312272 . - 0 Parent=ENST00000264819 | |
| 91 19 protein_coding CDS 313492 313643 . - 2 Parent=ENST00000264819 | |
| 92 19 protein_coding CDS 325635 325704 . - 0 Parent=ENST00000264819 | |
| 93 19 protein_coding CDS 326507 326598 . - 2 Parent=ENST00000264819 | |
| 94 19 protein_coding CDS 327133 327256 . - 0 Parent=ENST00000264819 | |
| 95 19 protein_coding CDS 327864 327989 . - 0 Parent=ENST00000264819 | |
| 96 19 protein_coding CDS 334400 334542 . - 2 Parent=ENST00000264819 | |
| 97 19 protein_coding CDS 336083 336173 . - 0 Parent=ENST00000264819 | |
| 98 19 protein_coding CDS 344774 344782 . - 0 Parent=ENST00000264819 | |
| 99 19 antisense transcript 305579 325706 . + . ID=ENST00000589092;geneID=ENSG00000267124;gene_name=CTD-3113P16.5 | |
| 100 19 antisense exon 305579 305934 . + . Parent=ENST00000589092 | |
| 101 19 antisense exon 325624 325706 . + . Parent=ENST00000589092 | |
| 102 19 retained_intron transcript 326607 336178 . - . ID=ENST00000586994;geneID=ENSG00000105556;gene_name=MIER2 | |
| 103 19 retained_intron exon 326607 327256 . - . Parent=ENST00000586994 | |
| 104 19 retained_intron exon 327864 327989 . - . Parent=ENST00000586994 | |
| 105 19 retained_intron exon 334400 334542 . - . Parent=ENST00000586994 | |
| 106 19 retained_intron exon 336083 336178 . - . Parent=ENST00000586994 | |
| 107 19 retained_intron transcript 327864 340599 . - . ID=ENST00000592722;geneID=ENSG00000105556;gene_name=MIER2 | |
| 108 19 retained_intron exon 327864 327989 . - . Parent=ENST00000592722 | |
| 109 19 retained_intron exon 330264 330380 . - . Parent=ENST00000592722 | |
| 110 19 retained_intron exon 334400 334542 . - . Parent=ENST00000592722 | |
| 111 19 retained_intron exon 336083 336173 . - . Parent=ENST00000592722 | |
| 112 19 retained_intron exon 340514 340599 . - . Parent=ENST00000592722 | |
| 113 19 retained_intron transcript 334115 344798 . - . ID=ENST00000587966;geneID=ENSG00000105556;gene_name=MIER2 | |
| 114 19 retained_intron exon 334115 334542 . - . Parent=ENST00000587966 | |
| 115 19 retained_intron exon 344774 344798 . - . Parent=ENST00000587966 | |
| 116 19 protein_coding mRNA 361750 376013 . - . ID=ENST00000342640;geneID=ENSG00000105549;gene_name=THEG | |
| 117 19 protein_coding exon 361750 362426 . - . Parent=ENST00000342640 | |
| 118 19 protein_coding exon 367065 367224 . - . Parent=ENST00000342640 | |
| 119 19 protein_coding exon 371205 371322 . - . Parent=ENST00000342640 | |
| 120 19 protein_coding exon 372631 372700 . - . Parent=ENST00000342640 | |
| 121 19 protein_coding exon 373470 373531 . - . Parent=ENST00000342640 | |
| 122 19 protein_coding exon 373940 374011 . - . Parent=ENST00000342640 | |
| 123 19 protein_coding exon 374299 374421 . - . Parent=ENST00000342640 | |
| 124 19 protein_coding exon 375663 376013 . - . Parent=ENST00000342640 | |
| 125 19 protein_coding CDS 362203 362426 . - 2 Parent=ENST00000342640 | |
| 126 19 protein_coding CDS 367065 367224 . - 0 Parent=ENST00000342640 | |
| 127 19 protein_coding CDS 371205 371322 . - 1 Parent=ENST00000342640 | |
| 128 19 protein_coding CDS 372631 372700 . - 2 Parent=ENST00000342640 | |
| 129 19 protein_coding CDS 373470 373531 . - 1 Parent=ENST00000342640 | |
| 130 19 protein_coding CDS 373940 374011 . - 1 Parent=ENST00000342640 | |
| 131 19 protein_coding CDS 374299 374421 . - 1 Parent=ENST00000342640 | |
| 132 19 protein_coding CDS 375663 375970 . - 0 Parent=ENST00000342640 | |
| 133 19 retained_intron transcript 362058 374620 . - . ID=ENST00000530711;geneID=ENSG00000105549;gene_name=THEG | |
| 134 19 retained_intron exon 362058 362426 . - . Parent=ENST00000530711 | |
| 135 19 retained_intron exon 367065 367224 . - . Parent=ENST00000530711 | |
| 136 19 retained_intron exon 374299 374620 . - . Parent=ENST00000530711 | |
| 137 19 protein_coding mRNA 362200 375970 . - . ID=ENST00000346878;geneID=ENSG00000105549;gene_name=THEG | |
| 138 19 protein_coding exon 362200 362426 . - . Parent=ENST00000346878 | |
| 139 19 protein_coding exon 367065 367224 . - . Parent=ENST00000346878 | |
| 140 19 protein_coding exon 371205 371322 . - . Parent=ENST00000346878 | |
| 141 19 protein_coding exon 372631 372700 . - . Parent=ENST00000346878 | |
| 142 19 protein_coding exon 373470 373531 . - . Parent=ENST00000346878 | |
| 143 19 protein_coding exon 374299 374421 . - . Parent=ENST00000346878 | |
| 144 19 protein_coding exon 375663 375970 . - . Parent=ENST00000346878 | |
| 145 19 protein_coding CDS 362203 362426 . - 2 Parent=ENST00000346878 | |
| 146 19 protein_coding CDS 367065 367224 . - 0 Parent=ENST00000346878 | |
| 147 19 protein_coding CDS 371205 371322 . - 1 Parent=ENST00000346878 | |
| 148 19 protein_coding CDS 372631 372700 . - 2 Parent=ENST00000346878 | |
| 149 19 protein_coding CDS 373470 373531 . - 1 Parent=ENST00000346878 | |
| 150 19 protein_coding CDS 374299 374421 . - 1 Parent=ENST00000346878 | |
| 151 19 protein_coding CDS 375663 375970 . - 0 Parent=ENST00000346878 | |
| 152 19 retained_intron transcript 367202 374249 . - . ID=ENST00000528213;geneID=ENSG00000105549;gene_name=THEG | |
| 153 19 retained_intron exon 367202 367224 . - . Parent=ENST00000528213 | |
| 154 19 retained_intron exon 371205 371322 . - . Parent=ENST00000528213 | |
| 155 19 retained_intron exon 372631 372700 . - . Parent=ENST00000528213 | |
| 156 19 retained_intron exon 373470 373531 . - . Parent=ENST00000528213 | |
| 157 19 retained_intron exon 373940 374249 . - . Parent=ENST00000528213 | |
| 158 19 processed_transcript transcript 397589 398941 . + . ID=ENST00000591757;geneID=ENSG00000267443;gene_name=AC010641.1 | |
| 159 19 processed_transcript exon 397589 397633 . + . Parent=ENST00000591757 | |
| 160 19 processed_transcript exon 398690 398941 . + . Parent=ENST00000591757 | |
| 161 19 protein_coding mRNA 405445 409139 . - . ID=ENST00000332235;geneID=ENSG00000183186;gene_name=C2CD4C | |
| 162 19 protein_coding exon 405445 408401 . - . Parent=ENST00000332235 | |
| 163 19 protein_coding exon 409006 409139 . - . Parent=ENST00000332235 | |
| 164 19 protein_coding CDS 407099 408361 . - 0 Parent=ENST00000332235 | |
| 165 19 retained_intron transcript 416583 419879 . - . ID=ENST00000587423;geneID=ENSG00000129946;gene_name=SHC2 | |
| 166 19 retained_intron exon 416583 417322 . - . Parent=ENST00000587423 | |
| 167 19 retained_intron exon 418923 419879 . - . Parent=ENST00000587423 | |
| 168 19 retained_intron transcript 416583 422828 . - . ID=ENST00000588376;geneID=ENSG00000129946;gene_name=SHC2 | |
| 169 19 retained_intron exon 416583 417322 . - . Parent=ENST00000588376 | |
| 170 19 retained_intron exon 418923 419056 . - . Parent=ENST00000588376 | |
| 171 19 retained_intron exon 422146 422828 . - . Parent=ENST00000588376 | |
| 172 19 protein_coding mRNA 416593 460996 . - . ID=ENST00000264554;geneID=ENSG00000129946;gene_name=SHC2 | |
| 173 19 protein_coding exon 416593 417322 . - . Parent=ENST00000264554 | |
| 174 19 protein_coding exon 418923 419056 . - . Parent=ENST00000264554 | |
| 175 19 protein_coding exon 422146 422456 . - . Parent=ENST00000264554 | |
| 176 19 protein_coding exon 425097 425231 . - . Parent=ENST00000264554 | |
| 177 19 protein_coding exon 430684 430747 . - . Parent=ENST00000264554 | |
| 178 19 protein_coding exon 434709 434865 . - . Parent=ENST00000264554 | |
| 179 19 protein_coding exon 436165 436291 . - . Parent=ENST00000264554 | |
| 180 19 protein_coding exon 436380 436431 . - . Parent=ENST00000264554 | |
| 181 19 protein_coding exon 436630 436683 . - . Parent=ENST00000264554 | |
| 182 19 protein_coding exon 438718 438837 . - . Parent=ENST00000264554 | |
| 183 19 protein_coding exon 438970 439030 . - . Parent=ENST00000264554 | |
| 184 19 protein_coding exon 440862 440932 . - . Parent=ENST00000264554 | |
| 185 19 protein_coding exon 460529 460996 . - . Parent=ENST00000264554 | |
| 186 19 protein_coding CDS 418931 419056 . - 0 Parent=ENST00000264554 | |
| 187 19 protein_coding CDS 422146 422456 . - 2 Parent=ENST00000264554 | |
| 188 19 protein_coding CDS 425097 425231 . - 2 Parent=ENST00000264554 | |
| 189 19 protein_coding CDS 430684 430747 . - 0 Parent=ENST00000264554 | |
| 190 19 protein_coding CDS 434709 434865 . - 1 Parent=ENST00000264554 | |
| 191 19 protein_coding CDS 436165 436291 . - 2 Parent=ENST00000264554 | |
| 192 19 protein_coding CDS 436380 436431 . - 0 Parent=ENST00000264554 | |
| 193 19 protein_coding CDS 436630 436683 . - 0 Parent=ENST00000264554 | |
| 194 19 protein_coding CDS 438718 438837 . - 0 Parent=ENST00000264554 | |
| 195 19 protein_coding CDS 438970 439030 . - 1 Parent=ENST00000264554 | |
| 196 19 protein_coding CDS 440862 440932 . - 0 Parent=ENST00000264554 | |
| 197 19 protein_coding CDS 460529 460996 . - 0 Parent=ENST00000264554 | |
| 198 19 retained_intron transcript 416609 441384 . - . ID=ENST00000589922;geneID=ENSG00000129946;gene_name=SHC2 | |
| 199 19 retained_intron exon 416609 417322 . - . Parent=ENST00000589922 | |
| 200 19 retained_intron exon 418923 419056 . - . Parent=ENST00000589922 | |
| 201 19 retained_intron exon 422146 422456 . - . Parent=ENST00000589922 | |
| 202 19 retained_intron exon 425097 425231 . - . Parent=ENST00000589922 | |
| 203 19 retained_intron exon 430684 430747 . - . Parent=ENST00000589922 | |
| 204 19 retained_intron exon 434709 434865 . - . Parent=ENST00000589922 | |
| 205 19 retained_intron exon 436165 436291 . - . Parent=ENST00000589922 | |
| 206 19 retained_intron exon 436380 436683 . - . Parent=ENST00000589922 | |
| 207 19 retained_intron exon 438718 438837 . - . Parent=ENST00000589922 | |
| 208 19 retained_intron exon 438970 439030 . - . Parent=ENST00000589922 | |
| 209 19 retained_intron exon 440862 441384 . - . Parent=ENST00000589922 | |
| 210 19 nonsense_mediated_decay mRNA 417200 436258 . - . ID=ENST00000590170;geneID=ENSG00000129946;gene_name=SHC2 | |
| 211 19 nonsense_mediated_decay exon 417200 417322 . - . Parent=ENST00000590170 | |
| 212 19 nonsense_mediated_decay exon 418923 419056 . - . Parent=ENST00000590170 | |
| 213 19 nonsense_mediated_decay exon 422146 422379 . - . Parent=ENST00000590170 | |
| 214 19 nonsense_mediated_decay exon 430684 430747 . - . Parent=ENST00000590170 | |
| 215 19 nonsense_mediated_decay exon 434709 434865 . - . Parent=ENST00000590170 | |
| 216 19 nonsense_mediated_decay exon 436165 436258 . - . Parent=ENST00000590170 | |
| 217 19 nonsense_mediated_decay CDS 434765 434865 . - 2 Parent=ENST00000590170 | |
| 218 19 nonsense_mediated_decay CDS 436165 436258 . - 0 Parent=ENST00000590170 | |
| 219 19 processed_transcript transcript 417200 436258 . - . ID=ENST00000591948;geneID=ENSG00000129946;gene_name=SHC2 | |
| 220 19 processed_transcript exon 417200 417322 . - . Parent=ENST00000591948 | |
| 221 19 processed_transcript exon 418923 419056 . - . Parent=ENST00000591948 | |
| 222 19 processed_transcript exon 422146 422379 . - . Parent=ENST00000591948 | |
| 223 19 processed_transcript exon 430684 430747 . - . Parent=ENST00000591948 | |
| 224 19 processed_transcript exon 434709 434865 . - . Parent=ENST00000591948 | |
| 225 19 processed_transcript exon 436165 436258 . - . Parent=ENST00000591948 | |
| 226 19 nonsense_mediated_decay mRNA 434702 460571 . - . ID=ENST00000590222;geneID=ENSG00000129946;gene_name=SHC2 | |
| 227 19 nonsense_mediated_decay exon 434702 434865 . - . Parent=ENST00000590222 | |
| 228 19 nonsense_mediated_decay exon 436165 436291 . - . Parent=ENST00000590222 | |
| 229 19 nonsense_mediated_decay exon 436380 436431 . - . Parent=ENST00000590222 | |
| 230 19 nonsense_mediated_decay exon 436630 436683 . - . Parent=ENST00000590222 | |
| 231 19 nonsense_mediated_decay exon 438718 438837 . - . Parent=ENST00000590222 | |
| 232 19 nonsense_mediated_decay exon 438970 439030 . - . Parent=ENST00000590222 | |
| 233 19 nonsense_mediated_decay exon 439233 439491 . - . Parent=ENST00000590222 | |
| 234 19 nonsense_mediated_decay exon 440862 440932 . - . Parent=ENST00000590222 | |
| 235 19 nonsense_mediated_decay exon 460529 460571 . - . Parent=ENST00000590222 | |
| 236 19 nonsense_mediated_decay CDS 439401 439491 . - 1 Parent=ENST00000590222 | |
| 237 19 nonsense_mediated_decay CDS 440862 440932 . - 0 Parent=ENST00000590222 | |
| 238 19 nonsense_mediated_decay CDS 460529 460571 . - 1 Parent=ENST00000590222 | |
| 239 19 retained_intron transcript 435771 436534 . - . ID=ENST00000591388;geneID=ENSG00000129946;gene_name=SHC2 | |
| 240 19 retained_intron exon 435771 435961 . - . Parent=ENST00000591388 | |
| 241 19 retained_intron exon 436165 436291 . - . Parent=ENST00000591388 | |
| 242 19 retained_intron exon 436380 436534 . - . Parent=ENST00000591388 | |
| 243 19 processed_transcript transcript 435779 439031 . - . ID=ENST00000590113;geneID=ENSG00000129946;gene_name=SHC2 | |
| 244 19 processed_transcript exon 435779 435961 . - . Parent=ENST00000590113 | |
| 245 19 processed_transcript exon 436165 436291 . - . Parent=ENST00000590113 | |
| 246 19 processed_transcript exon 436380 436431 . - . Parent=ENST00000590113 | |
| 247 19 processed_transcript exon 436630 436683 . - . Parent=ENST00000590113 | |
| 248 19 processed_transcript exon 438718 438837 . - . Parent=ENST00000590113 | |
| 249 19 processed_transcript exon 438970 439031 . - . Parent=ENST00000590113 | |
| 250 19 rRNA transcript 453134 453245 . + . ID=ENST00000516730;geneID=ENSG00000252539;gene_name=RNA5SP462 | |
| 251 19 rRNA exon 453134 453245 . + . Parent=ENST00000516730 | |
| 252 19 protein_coding mRNA 463346 474983 . - . ID=ENST00000315489;geneID=ENSG00000181781;gene_name=ODF3L2 | |
| 253 19 protein_coding exon 463346 464364 . - . Parent=ENST00000315489 | |
| 254 19 protein_coding exon 467649 467762 . - . Parent=ENST00000315489 | |
| 255 19 protein_coding exon 472394 472501 . - . Parent=ENST00000315489 | |
| 256 19 protein_coding exon 474621 474983 . - . Parent=ENST00000315489 | |
| 257 19 protein_coding CDS 463847 464364 . - 2 Parent=ENST00000315489 | |
| 258 19 protein_coding CDS 467649 467762 . - 2 Parent=ENST00000315489 | |
| 259 19 protein_coding CDS 472394 472501 . - 2 Parent=ENST00000315489 | |
| 260 19 protein_coding CDS 474621 474747 . - 0 Parent=ENST00000315489 | |
| 261 19 protein_coding mRNA 463467 474880 . - . ID=ENST00000382696;geneID=ENSG00000181781;gene_name=ODF3L2 | |
| 262 19 protein_coding exon 463467 464364 . - . Parent=ENST00000382696 | |
| 263 19 protein_coding exon 467649 467762 . - . Parent=ENST00000382696 | |
| 264 19 protein_coding exon 474621 474880 . - . Parent=ENST00000382696 | |
| 265 19 protein_coding CDS 463847 464364 . - 2 Parent=ENST00000382696 | |
| 266 19 protein_coding CDS 467649 467762 . - 2 Parent=ENST00000382696 | |
| 267 19 protein_coding CDS 474621 474747 . - 0 Parent=ENST00000382696 | |
| 268 19 retained_intron transcript 464146 472631 . - . ID=ENST00000591681;geneID=ENSG00000181781;gene_name=ODF3L2 | |
| 269 19 retained_intron exon 464146 464364 . - . Parent=ENST00000591681 | |
| 270 19 retained_intron exon 467649 467762 . - . Parent=ENST00000591681 | |
| 271 19 retained_intron exon 472394 472631 . - . Parent=ENST00000591681 | |
| 272 19 processed_transcript transcript 489176 505342 . + . ID=ENST00000587541;geneID=ENSG00000099866;gene_name=MADCAM1 | |
| 273 19 processed_transcript exon 489176 490039 . + . Parent=ENST00000587541 | |
| 274 19 processed_transcript exon 501669 501929 . + . Parent=ENST00000587541 | |
| 275 19 processed_transcript exon 504745 505342 . + . Parent=ENST00000587541 | |
| 276 19 antisense transcript 490046 507813 . - . ID=ENST00000592413;geneID=ENSG00000266933;gene_name=AC005775.2 | |
| 277 19 antisense exon 490046 490353 . - . Parent=ENST00000592413 | |
| 278 19 antisense exon 501541 501624 . - . Parent=ENST00000592413 | |
| 279 19 antisense exon 507376 507813 . - . Parent=ENST00000592413 | |
| 280 19 protein_coding mRNA 496454 505207 . + . ID=ENST00000346144;geneID=ENSG00000099866;gene_name=MADCAM1 | |
| 281 19 protein_coding exon 496454 496551 . + . Parent=ENST00000346144 | |
| 282 19 protein_coding exon 497833 498117 . + . Parent=ENST00000346144 | |
| 283 19 protein_coding exon 498496 498825 . + . Parent=ENST00000346144 | |
| 284 19 protein_coding exon 504745 505207 . + . Parent=ENST00000346144 | |
| 285 19 protein_coding CDS 496500 496551 . + 0 Parent=ENST00000346144 | |
| 286 19 protein_coding CDS 497833 498117 . + 2 Parent=ENST00000346144 | |
| 287 19 protein_coding CDS 498496 498825 . + 2 Parent=ENST00000346144 | |
| 288 19 protein_coding CDS 504745 504963 . + 2 Parent=ENST00000346144 | |
| 289 19 protein_coding mRNA 496454 505347 . + . ID=ENST00000215637;geneID=ENSG00000099866;gene_name=MADCAM1 | |
| 290 19 protein_coding exon 496454 496551 . + . Parent=ENST00000215637 | |
| 291 19 protein_coding exon 497833 498117 . + . Parent=ENST00000215637 | |
| 292 19 protein_coding exon 498496 498825 . + . Parent=ENST00000215637 | |
| 293 19 protein_coding exon 501669 501929 . + . Parent=ENST00000215637 | |
| 294 19 protein_coding exon 504745 505347 . + . Parent=ENST00000215637 | |
| 295 19 protein_coding CDS 496500 496551 . + 0 Parent=ENST00000215637 | |
| 296 19 protein_coding CDS 497833 498117 . + 2 Parent=ENST00000215637 | |
| 297 19 protein_coding CDS 498496 498825 . + 2 Parent=ENST00000215637 | |
| 298 19 protein_coding CDS 501669 501929 . + 2 Parent=ENST00000215637 | |
| 299 19 protein_coding CDS 504745 504963 . + 2 Parent=ENST00000215637 | |
| 300 19 protein_coding mRNA 496500 504965 . + . ID=ENST00000382683;geneID=ENSG00000099866;gene_name=MADCAM1 | |
| 301 19 protein_coding exon 496500 496551 . + . Parent=ENST00000382683 | |
| 302 19 protein_coding exon 498496 498825 . + . Parent=ENST00000382683 | |
| 303 19 protein_coding exon 504745 504965 . + . Parent=ENST00000382683 | |
| 304 19 protein_coding CDS 496500 496551 . + 0 Parent=ENST00000382683 | |
| 305 19 protein_coding CDS 498496 498825 . + 2 Parent=ENST00000382683 | |
| 306 19 protein_coding CDS 504745 504963 . + 2 Parent=ENST00000382683 | |
| 307 19 protein_coding mRNA 507299 519654 . + . ID=ENST00000359315;geneID=ENSG00000141933;gene_name=TPGS1 | |
| 308 19 protein_coding exon 507299 507844 . + . Parent=ENST00000359315 | |
| 309 19 protein_coding exon 518889 519654 . + . Parent=ENST00000359315 | |
| 310 19 protein_coding CDS 507507 507844 . + 0 Parent=ENST00000359315 | |
| 311 19 protein_coding CDS 518889 519421 . + 1 Parent=ENST00000359315 | |
| 312 19 retained_intron transcript 507500 510372 . + . ID=ENST00000588278;geneID=ENSG00000141933;gene_name=TPGS1 | |
| 313 19 retained_intron exon 507500 510372 . + . Parent=ENST00000588278 |