Mercurial > repos > devteam > gffread
comparison gffread.xml @ 2:6562753c6bdc draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/gffread commit 82ee6fc860c52c531b7a57bbb346ab1a67a434a5
| author | devteam |
|---|---|
| date | Sun, 19 Feb 2017 12:09:17 -0500 |
| parents | 96c4d0e18546 |
| children | 29769f789b8f |
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| 1:96c4d0e18546 | 2:6562753c6bdc |
|---|---|
| 1 <tool id="gffread" name="gffread" version="@VERSION@.0"> | 1 <tool id="gffread" name="gffread" version="@VERSION@.1"> |
| 2 <description>Filters and/or converts GFF3/GTF2 records</description> | 2 <description>Filters and/or converts GFF3/GTF2 records</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>cuff_macros.xml</import> | 4 <import>cuff_macros.xml</import> |
| 5 <xml name="fasta_output_select"> | 5 <xml name="fasta_output_select"> |
| 6 <param name="fa_outputs" type="select" display="checkboxes" multiple="true" label="Select fasta outputs"> | 6 <param name="fa_outputs" type="select" display="checkboxes" multiple="true" label="Select fasta outputs"> |
| 46 <expand macro="cluster_opts" /> | 46 <expand macro="cluster_opts" /> |
| 47 </param> | 47 </param> |
| 48 </xml> | 48 </xml> |
| 49 </macros> | 49 </macros> |
| 50 <expand macro="requirements" /> | 50 <expand macro="requirements" /> |
| 51 <expand macro="stdio" /> | 51 <command detect_errors="aggressive"> |
| 52 <command> | |
| 53 <![CDATA[ | 52 <![CDATA[ |
| 54 #if $reference_genome.source == 'history': | 53 #if $reference_genome.source == 'history': |
| 55 ln -s '$reference_genome.genome_fasta' genomeref.fa && | 54 ln -s '$reference_genome.genome_fasta' genomeref.fa && |
| 56 #end if | 55 #end if |
| 57 gffread '$input' | 56 gffread '$input' |