# HG changeset patch
# User iuc
# Date 1638570428 0
# Node ID c3da1614f96d9a882885cc37e1e4447e9c974592
# Parent  91271de440f0d44c24c26aa12e23e7bd576f13f2
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/freebayes commit a89c26123a658a71af5a0a66245b977384ab8867"

diff -r 91271de440f0 -r c3da1614f96d freebayes.xml
--- a/freebayes.xml	Wed Dec 01 21:49:34 2021 +0000
+++ b/freebayes.xml	Fri Dec 03 22:27:08 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="freebayes" name="FreeBayes" version="@TOOL_VERSION@+galaxy0">
+<tool id="freebayes" name="FreeBayes" version="@TOOL_VERSION@+galaxy1">
     <description>bayesian genetic variant detector</description>
     <xrefs>
         <xref type="bio.tools">freebayes</xref>
@@ -181,7 +181,7 @@
 
         ##INPUT FILTERS
             #if str( $options_type.input_filters.input_filters_selector ) == "set":
-                $standard_filters
+                ${options_type.input_filters.standard_filters}
                 ${options_type.input_filters.use_duplicate_reads}
                 --min-mapping-quality ${options_type.input_filters.min_mapping_quality}
                 --min-base-quality ${options_type.input_filters.min_base_quality}