# HG changeset patch
# User iuc
# Date 1534950222 14400
# Node ID 64203edc4ec1a61d07250e3f62e8b864d5eb4164
# Parent  9d06c848a6286933b6716aed317916fb50e389e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_reverse_complement commit 3953b65f6b1c0336e9cadbe0792a5d3b14b5643a

diff -r 9d06c848a628 -r 64203edc4ec1 fastx_reverse_complement.xml
--- a/fastx_reverse_complement.xml	Tue May 08 12:52:49 2018 -0400
+++ b/fastx_reverse_complement.xml	Wed Aug 22 11:03:42 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="cshl_fastx_reverse_complement" version="1.0.1" name="Reverse-Complement">
+<tool id="cshl_fastx_reverse_complement" version="1.0.2" name="Reverse-Complement">
     <description></description>
     <macros>
         <import>macros.xml</import>
@@ -8,6 +8,7 @@
 @CATS@ fastx_reverse_complement -v
 -o '$output'
 @FQQUAL@
+@GZIP@
     ]]></command>
     <inputs>
         <expand macro="fastx_input" />
diff -r 9d06c848a628 -r 64203edc4ec1 macros.xml
--- a/macros.xml	Tue May 08 12:52:49 2018 -0400
+++ b/macros.xml	Wed Aug 22 11:03:42 2018 -0400
@@ -2,7 +2,7 @@
 <macros>
     <token name="@CATS@">
         #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
-            zcat -f '$input' |
+            gunzip -c -f '$input' |
         #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'):
             bzcat -f '$input' |
         #else:
@@ -18,6 +18,13 @@
             #end if
         ]]>
     </token>
+    <token name="@GZIP@">
+        <![CDATA[
+            #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
+                -z
+            #end if
+        ]]>
+    </token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@VERSION@">fastx_toolkit</requirement>