Mercurial > repos > devteam > fastx_barcode_splitter

diff fastx_barcode_splitter_galaxy_wrapper.sh @ 3:3b0cd3132ddc draft

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planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 12:40:38 -0400
parents 6cbe88c680bb
children
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--- a/fastx_barcode_splitter_galaxy_wrapper.sh	Tue Jun 03 14:50:06 2014 -0400
+++ b/fastx_barcode_splitter_galaxy_wrapper.sh	Tue Oct 13 12:40:38 2015 -0400
@@ -62,7 +62,7 @@
 PREFIX="$BASEPATH""${LIBNAME}__"
 SUFFIX=".txt"
 
-RESULTS=`zcat -f "$FASTQ_FILE" | fastx_barcode_splitter.pl --bcfile "$BARCODE_FILE" --prefix "$PREFIX" --suffix "$SUFFIX" "$@"`
+RESULTS=`zcat -f < "$FASTQ_FILE" | fastx_barcode_splitter.pl --bcfile "$BARCODE_FILE" --prefix "$PREFIX" --suffix "$SUFFIX" "$@"`
 if [ $? != 0 ]; then
 	echo "error"
 fi