# HG changeset patch
# User devteam
# Date 1444754708 14400
# Node ID 2ebd6fcee4c4963bcfa5d82935bd997f8be79868
# Parent  daf96c3e3b60ac5530fbe45c42de810ab30e0602
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734

diff -r daf96c3e3b60 -r 2ebd6fcee4c4 fastq_to_fasta.xml
--- a/fastq_to_fasta.xml	Thu Jan 23 12:31:31 2014 -0500
+++ b/fastq_to_fasta.xml	Tue Oct 13 12:45:08 2015 -0400
@@ -32,12 +32,11 @@
 
 This tool converts FASTQ sequencing reads to FASTA sequences.
 
-------
-
-**Citation**
-
-If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. <http://www.ncbi.nlm.nih.gov/pubmed/20562416>`_
-
 
   </help>
+  
+  <citations>
+    <citation type="doi">10.1093/bioinformatics/btq281</citation>
+  </citations>
+  
 </tool>
diff -r daf96c3e3b60 -r 2ebd6fcee4c4 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Jan 23 12:31:31 2014 -0500
+++ b/tool_dependencies.xml	Tue Oct 13 12:45:08 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="galaxy_sequence_utils" version="1.0.0">
-      <repository changeset_revision="195699b1562a" name="package_galaxy_utils_1_0" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="195699b1562a" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>