# HG changeset patch
# User iuc
# Date 1494851667 14400
# Node ID 1f6fd7a898bd2a0edea37856889070f002bcde13
# Parent  0a7c65540937647d559cd87f0a740bde5f56fc29
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc commit 4b383d48868d7f3f6d35f242a0ee35953adcb037

diff -r 0a7c65540937 -r 1f6fd7a898bd rgFastQC.xml
--- a/rgFastQC.xml	Thu Apr 20 11:06:03 2017 -0400
+++ b/rgFastQC.xml	Mon May 15 08:34:27 2017 -0400
@@ -25,7 +25,8 @@
             #end if
     ]]></command>
     <inputs>
-        <param format="fastq,fastq.gz,fastq.bz2,bam,sam" name="input_file" type="data" label="Short read data from your current history" />
+        <param format="fastq,fastq.gz,fastq.bz2,bam,sam" name="input_file" type="data"
+               label="Short read data from your current history" />
         <param name="contaminants" type="data" format="tabular" optional="true" label="Contaminant list"
                help="tab delimited file with 2 columns: name and sequence.  For example: Illumina Small RNA RT Primer CAAGCAGAAGACGGCATACGA" />
         <param name="limits" type="data" format="txt" optional="true" label="Submodule and Limit specifing file"
@@ -88,7 +89,7 @@
 
 This is a Galaxy wrapper. It merely exposes the external package FastQC_ which is documented at FastQC_
 Kindly acknowledge it as well as this tool if you use it.
-FastQC incorporates the Picard-tools_ libraries for sam/bam processing.
+FastQC incorporates the Picard-tools_ libraries for SAM/BAM processing.
 
 The contaminants file parameter was borrowed from the independently developed
 fastqcwrapper contributed to the Galaxy Community Tool Shed by J. Johnson.
@@ -125,7 +126,7 @@
 
 All except Basic Statistics and Overrepresented sequences are plots.
  .. _FastQC: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
- .. _Picard-tools: http://picard.sourceforge.net/index.shtml
+ .. _Picard-tools: https://broadinstitute.github.io/picard/
     </help>
     <citations>
         <citation type="bibtex">