Mercurial > repos > devteam > fastqc
diff test-data/fastqc_data2.txt @ 6:e8c90ad3cbf9 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit df4c0b0c6372e2984966e220fa42ecd8a3d370e8
author | devteam |
---|---|
date | Mon, 31 Oct 2016 10:40:00 -0400 |
parents | ca0eb9b89b32 |
children | 7d8c56e1a3aa |
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--- a/test-data/fastqc_data2.txt Mon Jan 18 09:32:58 2016 -0500 +++ b/test-data/fastqc_data2.txt Mon Oct 31 10:40:00 2016 -0400 @@ -1,4 +1,4 @@ -##FastQC 0.11.2 +##FastQC 0.11.4 >>Basic Statistics pass #Measure Value Filename 1000gsample.fastq @@ -66,549 +66,6 @@ 53 19.5852 20.0 14.0 25.0 9.0 29.0 54 19.9424 21.0 14.0 26.0 7.0 30.0 >>END_MODULE ->>Per tile sequence quality pass -#Tile Base Mean -1 1 0.4542485249902164 -1 2 0.02493171505959424 -1 3 0.004493134032774293 -1 4 0.6119404948560927 -1 5 0.5283275008594686 -1 6 0.3741933003058371 -1 7 -0.2985554485298749 -1 8 0.6040181642739206 -1 9 0.43795745033596845 -1 10 0.05327706110314523 -1 11 0.8097461135057031 -1 12 0.9171964750225641 -1 13 1.0716973449965757 -1 14 0.562649938864773 -1 15 0.5112535943737946 -1 16 0.7098461441939676 -1 17 0.3989886413671577 -1 18 0.2351551176870892 -1 19 0.002716666680861124 -1 20 -0.5270840838615776 -1 21 0.08959510509382795 -1 22 -0.6322238602545553 -1 23 -0.8566085860715056 -1 24 -0.8167218970288026 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1.2741568491184836 -10 48 2.799334226444202 -10 49 3.441999390209105 -10 50 4.391043406721156 -10 51 3.7815999232367545 -10 52 1.3217607371315836 -10 53 3.0125314696670173 -10 54 2.2316249763308633 ->>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.5 32.64 25.919999999999998 19.939999999999998 @@ -5811,49 +5268,49 @@ TCTACTGCCTGCACTGCCTTTTCATCTAGCTCCAATTTATATTCTTGTAGTTTA 1 0.02 No Hit >>END_MODULE >>Adapter Content pass -#Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence -1 0.0 0.0 0.0 -2 0.02 0.0 0.0 -3 0.02 0.0 0.0 -4 0.02 0.0 0.0 -5 0.02 0.0 0.0 -6 0.02 0.0 0.0 -7 0.02 0.0 0.0 -8 0.02 0.0 0.0 -9 0.02 0.0 0.0 -10 0.02 0.0 0.0 -11 0.02 0.0 0.0 -12 0.02 0.0 0.0 -13 0.02 0.0 0.0 -14 0.02 0.0 0.0 -15 0.02 0.0 0.0 -16 0.02 0.0 0.0 -17 0.02 0.0 0.0 -18 0.02 0.0 0.0 -19 0.06 0.0 0.0 -20 0.36 0.0 0.0 -21 0.36 0.0 0.0 -22 0.36 0.0 0.0 -23 0.36 0.0 0.0 -24 0.36 0.0 0.0 -25 0.4 0.0 0.0 -26 0.4 0.0 0.0 -27 0.42 0.0 0.0 -28 0.62 0.0 0.0 -29 0.66 0.0 0.0 -30 0.68 0.0 0.0 -31 0.68 0.0 0.0 -32 0.68 0.0 0.0 -33 0.68 0.0 0.0 -34 0.7 0.0 0.0 -35 0.76 0.0 0.0 -36 0.8 0.0 0.0 -37 0.88 0.0 0.0 -38 1.0 0.0 0.0 -39 1.12 0.0 0.0 -40 1.22 0.0 0.0 -41 1.38 0.0 0.0 -42 1.48 0.0 0.0 +#Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence SOLID Small RNA Adapter +1 0.0 0.0 0.0 0.0 +2 0.02 0.0 0.0 0.0 +3 0.02 0.0 0.0 0.0 +4 0.02 0.0 0.0 0.0 +5 0.02 0.0 0.0 0.0 +6 0.02 0.0 0.0 0.0 +7 0.02 0.0 0.0 0.0 +8 0.02 0.0 0.0 0.0 +9 0.02 0.0 0.0 0.0 +10 0.02 0.0 0.0 0.0 +11 0.02 0.0 0.0 0.0 +12 0.02 0.0 0.0 0.0 +13 0.02 0.0 0.0 0.0 +14 0.02 0.0 0.0 0.0 +15 0.02 0.0 0.0 0.0 +16 0.02 0.0 0.0 0.0 +17 0.02 0.0 0.0 0.0 +18 0.02 0.0 0.0 0.0 +19 0.06 0.0 0.0 0.0 +20 0.36 0.0 0.0 0.0 +21 0.36 0.0 0.0 0.0 +22 0.36 0.0 0.0 0.0 +23 0.36 0.0 0.0 0.0 +24 0.36 0.0 0.0 0.0 +25 0.4 0.0 0.0 0.0 +26 0.4 0.0 0.0 0.0 +27 0.42 0.0 0.0 0.0 +28 0.62 0.0 0.0 0.0 +29 0.66 0.0 0.0 0.0 +30 0.68 0.0 0.0 0.0 +31 0.68 0.0 0.0 0.0 +32 0.68 0.0 0.0 0.0 +33 0.68 0.0 0.0 0.0 +34 0.7 0.0 0.0 0.0 +35 0.76 0.0 0.0 0.0 +36 0.8 0.0 0.0 0.0 +37 0.88 0.0 0.0 0.0 +38 1.0 0.0 0.0 0.0 +39 1.12 0.0 0.0 0.0 +40 1.22 0.0 0.0 0.0 +41 1.38 0.0 0.0 0.0 +42 1.48 0.0 0.0 0.0 >>END_MODULE >>Kmer Content pass >>END_MODULE