Mercurial > repos > devteam > fastq_to_tabular
comparison fastq_to_tabular.xml @ 6:45e810d28b63 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_to_tabular commit bb5df9e62585e12f08dfc0a9f86eec8e205b4845
| author | iuc |
|---|---|
| date | Fri, 04 Oct 2024 10:33:58 +0000 |
| parents | c9031442b526 |
| children |
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| 5:c9031442b526 | 6:45e810d28b63 |
|---|---|
| 1 <tool id="fastq_to_tabular" name="FASTQ to Tabular" version="@TOOL_VERSION@"> | 1 <tool id="fastq_to_tabular" name="FASTQ to Tabular" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
| 2 <description>converter</description> | 2 <description>converter</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | |
| 7 <edam_topics> | 6 <edam_topics> |
| 8 <edam_topic>topic_0622</edam_topic> | 7 <edam_topic>topic_0622</edam_topic> |
| 9 </edam_topics> | 8 </edam_topics> |
| 10 <edam_operations> | 9 <edam_operations> |
| 11 <edam_operation>operation_0233</edam_operation> | 10 <edam_operation>operation_0233</edam_operation> |
| 12 </edam_operations> | 11 </edam_operations> |
| 12 <expand macro="requirements"/> | |
| 13 <command><![CDATA[ | 13 <command><![CDATA[ |
| 14 gx-fastq-to-tabular '$input_file' '$output_file' $descr_columns '${input_file.extension[len('fastq'):]}' | 14 gx-fastq-to-tabular '$input_file' '$output_file' $descr_columns '${input_file.extension[len('fastq'):]}' |
| 15 ]]></command> | 15 ]]></command> |
| 16 <inputs> | 16 <inputs> |
| 17 <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqillumina,fastqsolexa,fastqsanger.gz,fastqcssanger.gz,fastqillumina.gz,fastqsolexa.gz,fastqsanger.bz2,fastqcssanger.bz2,fastqillumina.bz2,fastqsolexa.bz2" label="FASTQ file to convert" /> | 17 <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqillumina,fastqsolexa,fastqsanger.gz,fastqcssanger.gz,fastqillumina.gz,fastqsolexa.gz,fastqsanger.bz2,fastqcssanger.bz2,fastqillumina.bz2,fastqsolexa.bz2" label="FASTQ file to convert" /> |