# HG changeset patch # User devteam # Date 1444754410 14400 # Node ID 3f358f73d45ee4ce5cf91d310208f07eef453da0 # Parent 9d253ab73d8b0ce5f6abe51d82dad8f96772b062 planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734 diff -r 9d253ab73d8b -r 3f358f73d45e fastq_to_fasta.xml --- a/fastq_to_fasta.xml Tue Aug 20 10:38:07 2013 -0400 +++ b/fastq_to_fasta.xml Tue Oct 13 12:40:10 2015 -0400 @@ -1,9 +1,9 @@ - + converter fastx_toolkit - gunzip -cf $input | fastq_to_fasta $SKIPN $RENAMESEQ -o $output -v + gunzip -cf $input | fastq_to_fasta $SKIPN $RENAMESEQ -o $output -v #if $input.ext == "fastqsanger": -Q 33 #end if @@ -61,22 +61,22 @@ GGTCAATGATGAGTTGGCACTGTAGGCACCATCAAT +CSHL_4_FC042GAMMII_2_1_517_596 40 40 40 40 40 40 40 40 40 40 38 40 40 40 40 40 14 40 40 40 40 40 36 40 13 14 24 24 9 24 9 40 10 10 15 40 - + Will be converted to FASTA (with 'rename sequence names' = NO):: >CSHL_4_FC042GAMMII_2_1_517_596 GGTCAATGATGAGTTGGCACTGTAGGCACCATCAAT - + Will be converted to FASTA (with 'rename sequence names' = YES):: >1 GGTCAATGATGAGTTGGCACTGTAGGCACCATCAAT - + ------ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. - .. __: http://hannonlab.cshl.edu/fastx_toolkit/ + .. __: http://hannonlab.cshl.edu/fastx_toolkit/ diff -r 9d253ab73d8b -r 3f358f73d45e tool_dependencies.xml --- a/tool_dependencies.xml Tue Aug 20 10:38:07 2013 -0400 +++ b/tool_dependencies.xml Tue Oct 13 12:40:10 2015 -0400 @@ -1,6 +1,6 @@ - +