Mercurial > repos > devteam > fastq_to_fasta

diff macros.xml @ 4:5dbca5fbdc45 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastq_to_fasta commit 4c002e52261da2e7609735883d91fa1610ce6ce7"
author iuc
date Thu, 30 Jan 2020 18:26:18 +0000
parents 4498e994e31b
children b8e3c0a52f33
line wrap: on
line diff
--- a/macros.xml	Wed Aug 22 11:02:27 2018 -0400
+++ b/macros.xml	Thu Jan 30 18:26:18 2020 +0000
@@ -21,7 +21,9 @@
     <token name="@GZIP@">
         <![CDATA[
             #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
-                -z
+                | gzip -c
+            #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'):
+                | bzip2 -c
             #end if
         ]]>
     </token>