diff fastq_to_fasta.xml @ 1:3f358f73d45e draft

planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 12:40:10 -0400
parents 9d253ab73d8b
children 44ed3f74ea7a
line wrap: on
line diff
--- a/fastq_to_fasta.xml	Tue Aug 20 10:38:07 2013 -0400
+++ b/fastq_to_fasta.xml	Tue Oct 13 12:40:10 2015 -0400
@@ -1,9 +1,9 @@
-<tool id="cshl_fastq_to_fasta" name="FASTQ to FASTA">
+<tool id="cshl_fastq_to_fasta" name="FASTQ to FASTA" version="1.0.0">
 	<description>converter</description>
     <requirements>
         <requirement type="package" version="0.0.13">fastx_toolkit</requirement>
     </requirements>
-	<command>gunzip -cf $input | fastq_to_fasta $SKIPN $RENAMESEQ -o $output -v 
+	<command>gunzip -cf $input | fastq_to_fasta $SKIPN $RENAMESEQ -o $output -v
 #if $input.ext == "fastqsanger":
 -Q 33
 #end if
@@ -61,22 +61,22 @@
     GGTCAATGATGAGTTGGCACTGTAGGCACCATCAAT
     +CSHL_4_FC042GAMMII_2_1_517_596
     40 40 40 40 40 40 40 40 40 40 38 40 40 40 40 40 14 40 40 40 40 40 36 40 13 14 24 24 9 24 9 40 10 10 15 40
-  
+
 Will be converted to FASTA (with 'rename sequence names' = NO)::
 
     >CSHL_4_FC042GAMMII_2_1_517_596
     GGTCAATGATGAGTTGGCACTGTAGGCACCATCAAT
-    
+
 Will be converted to FASTA (with 'rename sequence names' = YES)::
 
     >1
     GGTCAATGATGAGTTGGCACTGTAGGCACCATCAAT
-    
+
 ------
 
 This tool is based on `FASTX-toolkit`__ by Assaf Gordon.
 
- .. __: http://hannonlab.cshl.edu/fastx_toolkit/    
+ .. __: http://hannonlab.cshl.edu/fastx_toolkit/
 </help>
 <!-- FASTQ-to-FASTA is part of the FASTX-toolkit, by A.Gordon (gordon@cshl.edu) -->
 </tool>