comparison macros.xml @ 4:a55430a1c754 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastq_quality_filter commit 3953b65f6b1c0336e9cadbe0792a5d3b14b5643a

3:7b6a748e438f

<?xml version="1.0"?>
<macros>
    <token name="@CATS@">
        #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
            zcat -f '$input' |
        #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'):
            bzcat -f '$input' |
        #else:
            cat '$input' |
        #end if

        <![CDATA[
            #if $input.is_of_type('fastqsanger', 'fastqsanger.gz', 'fastqsanger.bz2'):
                -Q 33
            #elif $input.is_of_type('fastqsolexa', 'fastqsolexa.gz', 'fastqsolexa.bz2', 'fastqillumina', 'fastqillumina.gz', 'fastqillumina.bz2'):
                -Q 64
            #end if
        ]]>
    </token>
    <xml name="requirements">
        <requirements>

4:a55430a1c754

<?xml version="1.0"?>
<macros>
    <token name="@CATS@">
        #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
            gunzip -c -f '$input' |
        #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'):
            bzcat -f '$input' |
        #else:
            cat '$input' |
        #end if

        <![CDATA[
            #if $input.is_of_type('fastqsanger', 'fastqsanger.gz', 'fastqsanger.bz2'):
                -Q 33
            #elif $input.is_of_type('fastqsolexa', 'fastqsolexa.gz', 'fastqsolexa.bz2', 'fastqillumina', 'fastqillumina.gz', 'fastqillumina.bz2'):
                -Q 64
            #end if
        ]]>
    </token>
    <token name="@GZIP@">
        <![CDATA[
            #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
                -z
            #end if
        ]]>
    </token>
    <xml name="requirements">
        <requirements>