Mercurial > repos > devteam > fastq_quality_boxplot
changeset 5:5a28b303e432 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastq_quality_boxplot commit 4c002e52261da2e7609735883d91fa1610ce6ce7"
| author | iuc |
|---|---|
| date | Thu, 30 Jan 2020 18:25:28 +0000 |
| parents | 439eed933bf9 |
| children | 101dc4d70c89 |
| files | fastq_quality_boxplot.xml macros.xml |
| diffstat | 2 files changed, 11 insertions(+), 2 deletions(-) [+] |
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--- a/fastq_quality_boxplot.xml Tue May 08 12:49:29 2018 -0400 +++ b/fastq_quality_boxplot.xml Thu Jan 30 18:25:28 2020 +0000 @@ -23,7 +23,7 @@ <tests> <test> <param name="input" value="fastq_quality_boxplot-in1.fastq" /> - <output name="output" file="fastq_quality_boxplot-out1.png" compare="sim_size" delta="768" /> + <output name="output" file="fastq_quality_boxplot-out1.png" compare="sim_size" delta="10000" /> </test> </tests> <help><![CDATA[
--- a/macros.xml Tue May 08 12:49:29 2018 -0400 +++ b/macros.xml Thu Jan 30 18:25:28 2020 +0000 @@ -2,7 +2,7 @@ <macros> <token name="@CATS@"> #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): - zcat -f '$input' | + gunzip -c -f '$input' | #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): bzcat -f '$input' | #else: @@ -18,6 +18,15 @@ #end if ]]> </token> + <token name="@GZIP@"> + <![CDATA[ + #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): + | gzip -c + #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): + | bzip2 -c + #end if + ]]> + </token> <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">fastx_toolkit</requirement>