comparison fastq_paired_end_joiner.xml @ 8:88c5637a57e5 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_joiner commit bb5df9e62585e12f08dfc0a9f86eec8e205b4845
author iuc
date Fri, 04 Oct 2024 10:33:45 +0000
parents 9ffd7cf6bc37
children
comparison
equal deleted inserted replaced
7:9ffd7cf6bc37 8:88c5637a57e5
1 <tool id="fastq_paired_end_joiner" name="FASTQ joiner" version="2.0.1.1+galaxy0"> 1 <!-- TODO as soon as possible adapt the TOOL VERSION macro token .. so far only bump minor versions -->
2 <tool id="fastq_paired_end_joiner" name="FASTQ joiner" version="2.0.1.1+galaxy1" profile="@PROFILE@">
2 <description>on paired end reads</description> 3 <description>on paired end reads</description>
3 <macros> 4 <macros>
4 <import>macros.xml</import> 5 <import>macros.xml</import>
5 </macros> 6 </macros>
6 <expand macro="requirements"/>
7 <edam_topics> 7 <edam_topics>
8 <edam_topic>topic_0622</edam_topic> 8 <edam_topic>topic_0622</edam_topic>
9 </edam_topics> 9 </edam_topics>
10 <edam_operations> 10 <edam_operations>
11 <edam_operation>operation_3436</edam_operation> 11 <edam_operation>operation_3436</edam_operation>
12 </edam_operations> 12 </edam_operations>
13 <expand macro="requirements"/>
13 <command><![CDATA[ 14 <command><![CDATA[
14 gx-fastq-paired-end-joiner '$input1_file' '${input1_file.extension[len('fastq'):]}' '$input2_file' '${input2_file.extension[len('fastq'):]}' '$output_file' $style '${paste_sequence}' 15 gx-fastq-paired-end-joiner '$input1_file' '${input1_file.extension[len('fastq'):]}' '$input2_file' '${input2_file.extension[len('fastq'):]}' '$output_file' $style '${paste_sequence}'
15 ]]></command> 16 ]]></command>
16 <inputs> 17 <inputs>
17 <param name="input1_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="Left-hand Reads" /> 18 <param name="input1_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="Left-hand Reads" />