Mercurial > repos > devteam > fastq_paired_end_interlacer
comparison fastq_paired_end_interlacer.xml @ 4:49b7bc41c7b0 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_interlacer commit d4ced60a941c4c4a2fe95de9c09a10086810b387"
| author | iuc |
|---|---|
| date | Wed, 19 Feb 2020 16:57:03 +0000 |
| parents | a59c6f7b14c3 |
| children | 15fab8bda4e3 |
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| 3:a59c6f7b14c3 | 4:49b7bc41c7b0 |
|---|---|
| 1 <tool id="fastq_paired_end_interlacer" name="FASTQ interlacer" version="1.2.0.1"> | 1 <tool id="fastq_paired_end_interlacer" name="FASTQ interlacer" version="1.2.0.1+galaxy0"> |
| 2 <description>on paired end reads</description> | 2 <description>on paired end reads</description> |
| 3 <edam_topics> | 3 <edam_topics> |
| 4 <edam_topic>topic_0622</edam_topic> | 4 <edam_topic>topic_0622</edam_topic> |
| 5 </edam_topics> | 5 </edam_topics> |
| 6 <edam_operations> | 6 <edam_operations> |
| 7 <edam_operation>operation_3436</edam_operation> | 7 <edam_operation>operation_3436</edam_operation> |
| 8 </edam_operations> | 8 </edam_operations> |
| 9 <requirements> | 9 <macros> |
| 10 <requirement type="package" version="1.1.2">galaxy_sequence_utils</requirement> | 10 <import>macros.xml</import> |
| 11 </requirements> | 11 </macros> |
| 12 <expand macro="requirements"/> | |
| 12 <command><![CDATA[ | 13 <command><![CDATA[ |
| 13 gx-fastq-paired-end-interlacer | 14 gx-fastq-paired-end-interlacer |
| 14 #if $reads.reads_selector == 'paired' | 15 #if $reads.reads_selector == 'paired' |
| 15 '${reads.input1_file}' ${reads.input1_file.extension[len('fastq'):]} '${reads.input2_file}' ${reads.input2_file.extension[len('fastq'):]} | 16 '${reads.input1_file}' ${reads.input1_file.extension[len('fastq'):]} '${reads.input2_file}' ${reads.input2_file.extension[len('fastq'):]} |
| 16 '$outfile_pairs' '$outfile_singles' | 17 '$outfile_pairs' '$outfile_singles' |