Mercurial > repos > devteam > fastq_paired_end_deinterlacer
changeset 2:f408707593be draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_deinterlacer commit 28c441e8aa66a55d276b0f6325d34086eb715872
| author | devteam |
|---|---|
| date | Sat, 07 Oct 2017 10:00:17 -0400 |
| parents | 64fa25e9b916 |
| children | e1f52cc8b54f |
| files | fastq_paired_end_deinterlacer.xml test-data/paired_end_merged_errors.fastqsanger.bz2 test-data/paired_end_merged_errors.fastqsanger.gz |
| diffstat | 3 files changed, 16 insertions(+), 2 deletions(-) [+] |
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--- a/fastq_paired_end_deinterlacer.xml Sat Sep 30 14:56:49 2017 -0400 +++ b/fastq_paired_end_deinterlacer.xml Sat Oct 07 10:00:17 2017 -0400 @@ -1,7 +1,7 @@ -<tool id="fastq_paired_end_deinterlacer" name="FASTQ de-interlacer" version="1.1.1"> +<tool id="fastq_paired_end_deinterlacer" name="FASTQ de-interlacer" version="1.1.2"> <description>on paired end reads</description> <requirements> - <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> + <requirement type="package" version="1.1.2">galaxy_sequence_utils</requirement> </requirements> <command><![CDATA[ gx-fastq-paired-end-deinterlacer '$input_file' '${input_file.extension[len('fastq'):]}' '$output1_pairs_file' '$output2_pairs_file' '$output1_singles_file' '$output2_singles_file' @@ -30,6 +30,20 @@ <output name="output1_singles_file" file="paired_end_1_cleaned_singles.fastqsanger" ftype="fastqsanger" /> <output name="output2_singles_file" file="paired_end_2_cleaned_singles.fastqsanger" ftype="fastqsanger" /> </test> + <test> + <param name="input_file" value="paired_end_merged_errors.fastqsanger.gz" ftype="fastqsanger.gz" /> + <output name="output1_pairs_file" file="paired_end_1_cleaned.fastqsanger" ftype="fastqsanger.gz" decompress="true" /> + <output name="output2_pairs_file" file="paired_end_2_cleaned.fastqsanger" ftype="fastqsanger.gz" decompress="true" /> + <output name="output1_singles_file" file="paired_end_1_cleaned_singles.fastqsanger" ftype="fastqsanger.gz" decompress="true" /> + <output name="output2_singles_file" file="paired_end_2_cleaned_singles.fastqsanger" ftype="fastqsanger.gz" decompress="true" /> + </test> + <test> + <param name="input_file" value="paired_end_merged_errors.fastqsanger.bz2" ftype="fastqsanger.bz2" /> + <output name="output1_pairs_file" file="paired_end_1_cleaned.fastqsanger" ftype="fastqsanger.bz2" decompress="true" /> + <output name="output2_pairs_file" file="paired_end_2_cleaned.fastqsanger" ftype="fastqsanger.bz2" decompress="true" /> + <output name="output1_singles_file" file="paired_end_1_cleaned_singles.fastqsanger" ftype="fastqsanger.bz2" decompress="true" /> + <output name="output2_singles_file" file="paired_end_2_cleaned_singles.fastqsanger" ftype="fastqsanger.bz2" decompress="true" /> + </test> </tests> <help><![CDATA[ **What it does**