Mercurial > repos > devteam > fastq_paired_end_deinterlacer
comparison fastq_paired_end_deinterlacer.xml @ 5:f55e4bfb3d68 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_deinterlacer commit bb5df9e62585e12f08dfc0a9f86eec8e205b4845
| author | iuc |
|---|---|
| date | Fri, 04 Oct 2024 10:33:33 +0000 |
| parents | 856881903346 |
| children |
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| 4:856881903346 | 5:f55e4bfb3d68 |
|---|---|
| 1 <tool id="fastq_paired_end_deinterlacer" name="FASTQ de-interlacer" version="@TOOL_VERSION@"> | 1 <tool id="fastq_paired_end_deinterlacer" name="FASTQ de-interlacer" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
| 2 <description>on paired end reads</description> | 2 <description>on paired end reads</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | |
| 7 <edam_topics> | 6 <edam_topics> |
| 8 <edam_topic>topic_0622</edam_topic> | 7 <edam_topic>topic_0622</edam_topic> |
| 9 </edam_topics> | 8 </edam_topics> |
| 10 <edam_operations> | 9 <edam_operations> |
| 11 <edam_operation>operation_3359</edam_operation> | 10 <edam_operation>operation_3359</edam_operation> |
| 12 </edam_operations> | 11 </edam_operations> |
| 12 <expand macro="requirements"/> | |
| 13 <command><![CDATA[ | 13 <command><![CDATA[ |
| 14 gx-fastq-paired-end-deinterlacer '$input_file' '${input_file.extension[len('fastq'):]}' '$output1_pairs_file' '$output2_pairs_file' '$output1_singles_file' '$output2_singles_file' | 14 gx-fastq-paired-end-deinterlacer '$input_file' '${input_file.extension[len('fastq'):]}' '$output1_pairs_file' '$output2_pairs_file' '$output1_singles_file' '$output2_singles_file' |
| 15 ]]></command> | 15 ]]></command> |
| 16 <inputs> | 16 <inputs> |
| 17 <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ reads" /> | 17 <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ reads" /> |