# HG changeset patch
# User devteam
# Date 1444754587 14400
# Node ID b50aeae8bcaa3c5126b2314aca82feb6b21f7195
# Parent  de14b969d7135810a00bfb1da856894b2b856d9c
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734

diff -r de14b969d713 -r b50aeae8bcaa fastq_manipulation.xml
--- a/fastq_manipulation.xml	Thu Jan 23 12:31:03 2014 -0500
+++ b/fastq_manipulation.xml	Tue Oct 13 12:43:07 2015 -0400
@@ -421,12 +421,8 @@
 3. Click **Add new Manipulate Reads**, change **Manipulate Reads on** to "Sequence Content", set **Sequence Manipulation Type** to "String Translate" and set **From** to "0123." and **To** to "ACGTN".
 4. Click Execute. The new history item will contained double-encoded psuedo-nucleotide space reads.
 
-------
-
-**Citation**
-
-If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. <http://www.ncbi.nlm.nih.gov/pubmed/20562416>`_
-
-
 </help>
+    <citations>
+        <citation type="doi">10.1093/bioinformatics/btq281</citation>
+    </citations>
 </tool>
diff -r de14b969d713 -r b50aeae8bcaa tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Jan 23 12:31:03 2014 -0500
+++ b/tool_dependencies.xml	Tue Oct 13 12:43:07 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="galaxy_sequence_utils" version="1.0.0">
-      <repository changeset_revision="195699b1562a" name="package_galaxy_utils_1_0" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="195699b1562a" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>