Mercurial > repos > devteam > fastq_groomer
comparison fastq_groomer.xml @ 6:3213285ee5d2 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_groomer commit bb5df9e62585e12f08dfc0a9f86eec8e205b4845
| author | iuc |
|---|---|
| date | Fri, 04 Oct 2024 10:33:13 +0000 |
| parents | 4fda2184efa5 |
| children |
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| 5:4fda2184efa5 | 6:3213285ee5d2 |
|---|---|
| 1 <tool id="fastq_groomer" name="FASTQ Groomer" version="@TOOL_VERSION@"> | 1 <tool id="fastq_groomer" name="FASTQ Groomer" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
| 2 <description>convert between various FASTQ quality formats</description> | 2 <description>convert between various FASTQ quality formats</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | |
| 7 <edam_topics> | 6 <edam_topics> |
| 8 <edam_topic>topic_0622</edam_topic> | 7 <edam_topic>topic_0622</edam_topic> |
| 9 </edam_topics> | 8 </edam_topics> |
| 10 <edam_operations> | 9 <edam_operations> |
| 11 <edam_operation>operation_0233</edam_operation> | 10 <edam_operation>operation_0233</edam_operation> |
| 12 </edam_operations> | 11 </edam_operations> |
| 12 <expand macro="requirements"/> | |
| 13 <command><![CDATA[ | 13 <command><![CDATA[ |
| 14 gx-fastq-groomer '$input_file' | 14 gx-fastq-groomer '$input_file' |
| 15 #if $input_file.extension.endswith(".gz"): | 15 #if $input_file.extension.endswith(".gz"): |
| 16 #set $suffix = ".gz" | 16 #set $suffix = ".gz" |
| 17 #elif $input_file.extension.endswith(".bz2"): | 17 #elif $input_file.extension.endswith(".bz2"): |