# HG changeset patch
# User iuc
# Date 1580408707 0
# Node ID 156cfcd126c324cb218afc2104365d8569e8ecfd
# Parent  da8b20552cf43096ac3c2a4ebff3ac7677940d96
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fasta_nucleotide_changer commit 4c002e52261da2e7609735883d91fa1610ce6ce7"

diff -r da8b20552cf4 -r 156cfcd126c3 fasta_nucleotide_changer.xml
--- a/fasta_nucleotide_changer.xml	Wed Aug 22 11:01:47 2018 -0400
+++ b/fasta_nucleotide_changer.xml	Thu Jan 30 18:25:07 2020 +0000
@@ -8,8 +8,7 @@
 @CATS@ fasta_nucleotide_changer
 -$mode
 -v
--o '$output'
-@GZIP@
+@GZIP@ > '$output'
     ]]></command>
     <inputs>
         <expand macro="fasta_input" />
diff -r da8b20552cf4 -r 156cfcd126c3 macros.xml
--- a/macros.xml	Wed Aug 22 11:01:47 2018 -0400
+++ b/macros.xml	Thu Jan 30 18:25:07 2020 +0000
@@ -21,7 +21,9 @@
     <token name="@GZIP@">
         <![CDATA[
             #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
-                -z
+                | gzip -c
+            #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'):
+                | bzip2 -c
             #end if
         ]]>
     </token>