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changeset 20:21a9fb508031 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
author iuc
date Tue, 31 Aug 2021 08:05:39 +0000
parents d0847fe9b443
children
files emboss_antigenic.xml emboss_backtranseq.xml emboss_banana.xml emboss_biosed.xml emboss_btwisted.xml emboss_cai.xml emboss_cai_custom.xml emboss_chaos.xml emboss_charge.xml emboss_checktrans.xml emboss_chips.xml emboss_cirdna.xml emboss_codcmp.xml emboss_coderet.xml emboss_compseq.xml emboss_cpgplot.xml emboss_cpgreport.xml emboss_cusp.xml emboss_cutseq.xml emboss_dan.xml emboss_degapseq.xml emboss_descseq.xml emboss_diffseq.xml emboss_digest.xml emboss_dotmatcher.xml emboss_dotpath.xml emboss_dottup.xml emboss_dreg.xml emboss_einverted.xml emboss_epestfind.xml emboss_equicktandem.xml emboss_est2genome.xml emboss_etandem.xml emboss_extractfeat.xml emboss_extractseq.xml emboss_freak.xml emboss_fuzznuc.xml emboss_fuzzpro.xml emboss_fuzztran.xml emboss_garnier.xml emboss_geecee.xml emboss_getorf.xml emboss_helixturnhelix.xml emboss_hmoment.xml emboss_iep.xml emboss_infoseq.xml emboss_isochore.xml emboss_lindna.xml emboss_marscan.xml emboss_maskfeat.xml emboss_maskseq.xml emboss_matcher.xml emboss_megamerger.xml emboss_merger.xml emboss_msbar.xml emboss_needle.xml emboss_newcpgreport.xml emboss_newcpgseek.xml emboss_newseq.xml emboss_noreturn.xml emboss_notseq.xml emboss_nthseq.xml emboss_octanol.xml emboss_oddcomp.xml emboss_palindrome.xml emboss_pasteseq.xml emboss_patmatdb.xml emboss_pepcoil.xml emboss_pepinfo.xml emboss_pepnet.xml emboss_pepstats.xml emboss_pepwheel.xml emboss_pepwindow.xml emboss_pepwindowall.xml emboss_plotcon.xml emboss_plotorf.xml emboss_polydot.xml emboss_preg.xml emboss_prettyplot.xml emboss_prettyseq.xml emboss_primersearch.xml emboss_revseq.xml emboss_seqmatchall.xml emboss_seqret.xml emboss_showfeat.xml emboss_shuffleseq.xml emboss_sigcleave.xml emboss_sirna.xml emboss_sixpack.xml emboss_skipseq.xml emboss_splitter.xml emboss_supermatcher.xml emboss_syco.xml emboss_tcode.xml emboss_textsearch.xml emboss_tmap.xml emboss_tranalign.xml emboss_transeq.xml emboss_trimest.xml emboss_trimseq.xml emboss_twofeat.xml emboss_union.xml emboss_vectorstrip.xml emboss_water.xml emboss_wobble.xml emboss_wordcount.xml emboss_wordmatch.xml macros.xml
diffstat 108 files changed, 112 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/emboss_antigenic.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_antigenic.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: antigenic1" name="antigenic" version="@VERSION@.1">
   <description>Predicts potentially antigenic regions of a protein sequence, using the method of Kolaskar and Tongaonkar.</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_backtranseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_backtranseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: backtranseq2" name="backtranseq" version="6.6.0">
     <description>Back translate a protein sequence</description>
+  <expand macro="bio_tools" />
     <macros>
         <import>macros.xml</import>
     </macros>
--- a/emboss_banana.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_banana.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: banana3" name="banana" version="@VERSION@">
   <description>Bending and curvature plot in B-DNA</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_biosed.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_biosed.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: biosed4" name="biosed" version="@VERSION@">
   <description>Replace or delete sequence sections</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_btwisted.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_btwisted.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: btwisted5" name="btwisted" version="@VERSION@">
   <description>Calculates the twisting in a B-DNA sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_cai.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_cai.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: cai6" name="cai" version="@VERSION@">
   <description>CAI codon adaptation index</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_cai_custom.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_cai_custom.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: cai_custom6" name="cai custom" version="@VERSION@">
   <description>CAI codon adaptation index using custom codon usage file</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_chaos.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_chaos.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: chaos7" name="chaos" version="@VERSION@">
   <description>Create a chaos game representation plot for a sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_charge.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_charge.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: charge8" name="charge" version="@VERSION@.1">
   <description>Protein charge plot</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_checktrans.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_checktrans.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: checktrans9" name="checktrans" version="@VERSION@.1">
   <description>Reports STOP codons and ORF statistics of a protein</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_chips.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_chips.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: chips10" name="chips" version="@VERSION@">
   <description>Codon usage statistics</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_cirdna.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_cirdna.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: cirdna11" name="cirdna" version="@VERSION@">
   <description>Draws circular maps of DNA constructs</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_codcmp.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_codcmp.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: codcmp12" name="codcmp" version="@VERSION@">
   <description>Codon usage table comparison</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_coderet.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_coderet.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: coderet13" name="coderet" version="@VERSION@">
   <description>Extract CDS, mRNA and translations from feature tables</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_compseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_compseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: compseq14" name="compseq" version="@VERSION@.1">
   <description>Count composition of dimer/trimer/etc words in a sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_cpgplot.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_cpgplot.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: cpgplot15" name="cpgplot" version="@VERSION@">
   <description>Plot CpG rich areas</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_cpgreport.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_cpgreport.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: cpgreport16" name="cpgreport" version="@VERSION@.1">
   <description>Reports all CpG rich regions</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_cusp.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_cusp.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: cusp17" name="cusp" version="@VERSION@">
   <description>Create a codon usage table</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_cutseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_cutseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: cutseq18" name="cutseq" version="@VERSION@.1">
   <description>Removes a specified section from a sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_dan.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_dan.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: dan19" name="dan" version="@VERSION@.1">
   <description>Calculates DNA RNA/DNA melting temperature</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_degapseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_degapseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: degapseq20" name="degapseq" version="@VERSION@">
   <description>Removes gap characters from sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_descseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_descseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: descseq21" name="descseq" version="@VERSION@">
   <description>Alter the name or description of a sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_diffseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_diffseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: diffseq22" name="diffseq" version="@VERSION@.1">
   <description>Find differences between nearly identical sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_digest.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_digest.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: digest23" name="digest" version="@VERSION@">
   <description>Protein proteolytic enzyme or reagent cleavage digest</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_dotmatcher.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_dotmatcher.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: dotmatcher24" name="dotmatcher" version="@VERSION@.1">
   <description>Displays a thresholded dotplot of two sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_dotpath.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_dotpath.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: dotpath25" name="dotpath" version="@VERSION@.1">
   <description>Non-overlapping wordmatch dotplot of two sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_dottup.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_dottup.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: dottup26" name="dottup" version="@VERSION@.1">
   <description>Displays a wordmatch dotplot of two sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_dreg.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_dreg.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: dreg27" name="dreg" version="@VERSION@+galaxy1">
   <description>Regular expression search of a nucleotide sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_einverted.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_einverted.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: einverted28" name="einverted" version="@VERSION@.1">
   <description>Finds DNA inverted repeats</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_epestfind.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_epestfind.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: epestfind29" name="epestfind" version="@VERSION@.1">
   <description>Finds PEST motifs as potential proteolytic cleavage sites</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_equicktandem.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_equicktandem.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: equicktandem31" name="equicktandem" version="@VERSION@.1">
   <description>Finds tandem repeats</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_est2genome.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_est2genome.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: est2genome32" name="est2genome" version="@VERSION@.1">
   <description>Align EST and genomic DNA sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_etandem.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_etandem.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: etandem33" name="etandem" version="@VERSION@.1">
   <description>Looks for tandem repeats in a nucleotide sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_extractfeat.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_extractfeat.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: extractfeat34" name="extractfeat" version="@VERSION@.1">
   <!-- tool tested with documentation, functional test not designed due to empty files resulting from test input sequences -->
   <description>Extract features from a sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_extractseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_extractseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: extractseq35" name="extractseq" version="@VERSION@">
   <description>Extract regions from a sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_freak.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_freak.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: freak36" name="freak" version="@VERSION@.1">
   <description>Residue/base frequency table or plot</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_fuzznuc.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_fuzznuc.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: fuzznuc37" name="fuzznuc" version="5.0.3">
   <description>Nucleic acid pattern search</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_fuzzpro.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_fuzzpro.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: fuzzpro38" name="fuzzpro" version="@VERSION@.1">
   <description>Protein pattern search</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_fuzztran.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_fuzztran.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: fuzztran39" name="fuzztran" version="@VERSION@.1">
   <description>Protein pattern search after translation</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_garnier.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_garnier.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: garnier40" name="garnier" version="@VERSION@">
   <description>Predicts protein secondary structure</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_geecee.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_geecee.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: geecee41" name="geecee" version="@VERSION@">
   <description>Calculates fractional GC content of nucleic acid sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_getorf.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_getorf.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: getorf42" name="getorf" version="@VERSION@.1">
   <description>Finds and extracts open reading frames (ORFs)</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_helixturnhelix.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_helixturnhelix.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: helixturnhelix43" name="helixturnhelix" version="@VERSION@.1">
   <description>Report nucleic acid binding motifs</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_hmoment.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_hmoment.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: hmoment44" name="hmoment" version="@VERSION@.1">
   <description>Hydrophobic moment calculation</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_iep.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_iep.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: iep45" name="iep" version="@VERSION@.1">
   <description>Calculates the isoelectric point of a protein</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_infoseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_infoseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: infoseq46" name="infoseq" version="@VERSION@">
   <!-- info contains file information always -->
   <description>Displays some simple information about sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_isochore.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_isochore.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: isochore47" name="isochore" version="@VERSION@.1">
   <description>Plots isochores in large DNA sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_lindna.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_lindna.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: lindna48" name="lindna" version="@VERSION@.1">
   <!-- tool produces memory error in ajmem.c -->
   <description>Draws linear maps of DNA constructs</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_marscan.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_marscan.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: marscan49" name="marscan" version="@VERSION@">
   <description>Finds MAR/SAR sites in nucleic sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_maskfeat.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_maskfeat.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: maskfeat50" name="maskfeat" version="@VERSION@">
   <description>Mask off features of a sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_maskseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_maskseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: maskseq51" name="maskseq" version="@VERSION@">
   <description>Mask off regions of a sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_matcher.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_matcher.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: matcher52" name="matcher" version="@VERSION@.1">
   <description>Finds the best local alignments between two sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_megamerger.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_megamerger.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: megamerger53" name="megamerger" version="@VERSION@.1">
   <description>Merge two large overlapping nucleic acid sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_merger.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_merger.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: merger54" name="merger" version="@VERSION@.1">
   <description>Merge two overlapping nucleic acid sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_msbar.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_msbar.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: msbar55" name="msbar" version="@VERSION@.1">
   <description>Mutate sequence beyond all recognition</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_needle.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_needle.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: needle56" name="needle" version="@VERSION@.1">
   <description>Needleman-Wunsch global alignment</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_newcpgreport.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_newcpgreport.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: newcpgreport57" name="newcpgreport" version="@VERSION@.1">
   <description>Report CpG rich areas</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_newcpgseek.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_newcpgseek.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: newcpgseek58" name="newcpgseek" version="@VERSION@.1">
   <description>Reports CpG rich region</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_newseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_newseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: newseq59" name="newseq" version="@VERSION@">
   <description>Type in a short new sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_noreturn.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_noreturn.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: noreturn60" name="noreturn" version="@VERSION@">
   <description>Removes carriage return from ASCII files</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_notseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_notseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: notseq61" name="notseq" version="@VERSION@">
   <description>Exclude a set of sequences and write out the remaining ones</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_nthseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_nthseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: nthseq62" name="nthseq" version="@VERSION@.1">
   <description>Writes one sequence from a multiple set of sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_octanol.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_octanol.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: octanol63" name="octanol" version="@VERSION@.1">
   <!-- graphics output with filename, no functional tests added -->
   <description>Displays protein hydropathy</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_oddcomp.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_oddcomp.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: oddcomp64" name="oddcomp" version="@VERSION@.1">
   <!-- output contains file location info, commented out functional tests -->
   <description>Find protein sequence regions with a biased composition</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_palindrome.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_palindrome.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: palindrome65" name="palindrome" version="@VERSION@.1">
   <description>Looks for inverted repeats in a nucleotide sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_pasteseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_pasteseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: pasteseq66" name="pasteseq" version="@VERSION@.1">
   <description>Insert one sequence into another</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_patmatdb.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_patmatdb.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: patmatdb67" name="patmatdb" version="@VERSION@">
   <description>Search a protein sequence with a motif</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_pepcoil.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_pepcoil.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: pepcoil68" name="pepcoil" version="@VERSION@.1">
   <description>Predicts coiled coil regions</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_pepinfo.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_pepinfo.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: pepinfo69" name="pepinfo" version="@VERSION@.1">
   <!-- puts file info in output files -->
   <description>Plots simple amino acid properties in parallel</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_pepnet.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_pepnet.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: pepnet70" name="pepnet" version="@VERSION@">
   <!-- graphical output file with path information -->
   <description>Displays proteins as a helical net</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_pepstats.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_pepstats.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: pepstats71" name="pepstats" version="@VERSION@">
   <description>Protein statistics</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_pepwheel.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_pepwheel.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: pepwheel72" name="pepwheel" version="@VERSION@.1">
   <!-- produces png file -->
   <description>Shows protein sequences as helices</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_pepwindow.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_pepwindow.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: pepwindow73" name="pepwindow" version="@VERSION@.1">
   <!-- produces png file -->
   <description>Displays protein hydropathy</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_pepwindowall.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_pepwindowall.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: pepwindowall74" name="pepwindowall" version="@VERSION@.1">
   <!-- produces png file -->
   <description>Displays protein hydropathy of a set of sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_plotcon.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_plotcon.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: plotcon75" name="plotcon" version="@VERSION@.1">
   <!-- produces png file -->
   <description>Plot quality of conservation of a sequence alignment</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_plotorf.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_plotorf.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: plotorf76" name="plotorf" version="@VERSION@">
   <!-- produces png file output -->
   <description>Plot potential open reading frames</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_polydot.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_polydot.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: polydot77" name="polydot" version="@VERSION@.1">
   <!-- produces png file, not added functional tests -->
   <description>Displays all-against-all dotplots of a set of sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_preg.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_preg.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: preg78" name="preg" version="@VERSION@+galaxy1">
   <description>Regular expression search of a protein sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_prettyplot.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_prettyplot.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: prettyplot79" name="prettyplot" version="@VERSION@.1">
   <!-- produces png output with file name -->
   <description>Displays aligned sequences, with colouring and boxing</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_prettyseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_prettyseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: prettyseq80" name="prettyseq" version="@VERSION@.1">
   <description>Output sequence with translated ranges</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_primersearch.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_primersearch.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: primersearch81" name="primersearch" version="@VERSION@.1">
   <description>Searches DNA sequences for matches with primer pairs</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_revseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_revseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: revseq82" name="revseq" version="@VERSION@">
   <description>Reverse and complement a sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_seqmatchall.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_seqmatchall.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: seqmatchall83" name="seqmatchall" version="@VERSION@.1">
   <description>All-against-all comparison of a set of sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_seqret.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_seqret.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: seqret84" name="seqret" version="@VERSION@">
   <description>Reads and writes sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_showfeat.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_showfeat.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: showfeat85" name="showfeat" version="@VERSION@.1">
   <!-- tool gives memory errors -->
   <description>Show features of a sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_shuffleseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_shuffleseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: shuffleseq87" name="shuffleseq" version="@VERSION@.1">
   <!-- produces random outputs each time -->
   <description>Shuffles a set of sequences maintaining composition</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_sigcleave.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_sigcleave.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: sigcleave88" name="sigcleave" version="@VERSION@.1">
   <description>Reports protein signal cleavage sites</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_sirna.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_sirna.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: sirna89" name="sirna" version="@VERSION@">
   <description>Finds siRNA duplexes in mRNA</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_sixpack.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_sixpack.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: sixpack90" name="sixpack" version="@VERSION@+galaxy2">
   <!-- tool adds file description and timestamp to output data -->
   <description>Display a DNA sequence with 6-frame translation and ORFs</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_skipseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_skipseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: skipseq91" name="skipseq" version="@VERSION@.1">
   <description>Reads and writes sequences, skipping first few</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_splitter.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_splitter.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: splitter92" name="splitter" version="@VERSION@.1">
   <description>Split a sequence into (overlapping) smaller sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_supermatcher.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_supermatcher.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: supermatcher95" name="supermatcher" version="@VERSION@.1">
   <!-- puts file information in output report -->
   <description>Match large sequences against one or more other sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_syco.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_syco.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,6 +1,7 @@
 <tool id="EMBOSS: syco96" name="syco" version="@VERSION@.1">
   <!-- graphics output -->
   <description>Synonymous codon usage Gribskov statistic plot</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_tcode.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_tcode.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: tcode97" name="tcode" version="@VERSION@.1">
   <description>Fickett TESTCODE statistic to identify protein-coding DNA</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_textsearch.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_textsearch.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: textsearch98" name="textsearch" version="@VERSION@">
   <description>Search sequence documentation. Slow, use SRS and Entrez!</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_tmap.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_tmap.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: tmap99" name="tmap" version="@VERSION@">
   <description>Displays membrane spanning regions</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_tranalign.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_tranalign.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: tranalign100" name="tranalign" version="@VERSION@">
     <description>Align nucleic coding regions given the aligned proteins</description>
+    <expand macro="bio_tools" />
     <macros>
         <import>macros.xml</import>
     </macros>
--- a/emboss_transeq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_transeq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: transeq101" name="transeq" version="@VERSION@">
     <description>Translate nucleic acid sequences</description>
+    <expand macro="bio_tools" />
     <macros>
         <import>macros.xml</import>
     </macros>
--- a/emboss_trimest.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_trimest.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: trimest102" name="trimest" version="@VERSION@.1">
   <description>Trim poly-A tails off EST sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_trimseq.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_trimseq.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: trimseq103" name="trimseq" version="@VERSION@.1">
   <description>Trim ambiguous bits off the ends of sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_twofeat.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_twofeat.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: twofeat104" name="twofeat" version="@VERSION@.1">
   <description>Finds neighbouring pairs of features in sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_union.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_union.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: union105" name="union" version="@VERSION@">
   <description>Reads sequence fragments and builds one sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_vectorstrip.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_vectorstrip.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: vectorstrip106" name="vectorstrip" version="@VERSION@.1">
   <description>Strips out DNA between a pair of vector sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_water.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_water.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: water107" name="water" version="@VERSION@.1">
   <description>Smith-Waterman local alignment</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_wobble.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_wobble.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: wobble108" name="wobble" version="@VERSION@.1">
   <description>Wobble base plot</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_wordcount.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_wordcount.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: wordcount109" name="wordcount" version="@VERSION@.1">
   <description>Counts words of a specified size in a DNA sequence</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/emboss_wordmatch.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/emboss_wordmatch.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="EMBOSS: wordmatch110" name="wordmatch" version="@VERSION@.1">
   <description>Finds all exact matches of a given size between 2 sequences</description>
+  <expand macro="bio_tools" />
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/macros.xml	Fri Jul 09 18:35:00 2021 +0000
+++ b/macros.xml	Tue Aug 31 08:05:39 2021 +0000
@@ -12,6 +12,11 @@
             <exit_code range="1:" />
         </stdio>
     </xml>
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">emboss</xref>
+        </xrefs>
+    </xml>
     <xml name="citations">
         <citations>
             <citation type="doi">10.1016/S0168-9525(00)02024-2</citation>