# HG changeset patch
# User iuc
# Date 1575339176 0
# Node ID bde3097ac0f6cdc10dc2d307cedd900c65b99c38
# Parent 33381b9c268c958868b00c8486c6772b750052ac
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit d5dfff2cd58b094e0e4a6f8dc475de5facd9700b"
diff -r 33381b9c268c -r bde3097ac0f6 emboss_cpgplot_wrapper.pl
--- a/emboss_cpgplot_wrapper.pl Mon Jan 28 14:49:47 2019 -0500
+++ b/emboss_cpgplot_wrapper.pl Tue Dec 03 02:12:56 2019 +0000
@@ -1,5 +1,5 @@
-#! /usr/bin/perl -w
use strict;
+use warnings;
use File::Copy;
my $cmd_string = join (" ",@ARGV);
diff -r 33381b9c268c -r bde3097ac0f6 emboss_infoseq_wrapper.pl
--- a/emboss_infoseq_wrapper.pl Mon Jan 28 14:49:47 2019 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,9 +0,0 @@
-#! /usr/bin/perl -w
-use strict;
-
-my $cmd_string = join (" ",@ARGV);
-my $results = `$cmd_string`;
-if ($ARGV[6]=~/yes/)
-{
- print "Extension: html\n";
-}
diff -r 33381b9c268c -r bde3097ac0f6 emboss_multiple_outputfile_wrapper.pl
--- a/emboss_multiple_outputfile_wrapper.pl Mon Jan 28 14:49:47 2019 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,19 +0,0 @@
-#! /usr/bin/perl -w
-use strict;
-
-my $cmd_string = join (" ",@ARGV);
-my $results = `$cmd_string`;
-my @files = split("\n",$results);
-foreach my $thisLine (@files)
-{
- if ($thisLine =~ /Created /)
- {
- $thisLine =~ /[\w|\.]+$/;
- $thisLine =$&;
- print "outfile: $thisLine\n";
- }
- else
- {
- print $thisLine,"\n";
- }
-}
diff -r 33381b9c268c -r bde3097ac0f6 emboss_single_outputfile_wrapper.pl
--- a/emboss_single_outputfile_wrapper.pl Mon Jan 28 14:49:47 2019 -0500
+++ b/emboss_single_outputfile_wrapper.pl Tue Dec 03 02:12:56 2019 +0000
@@ -1,5 +1,5 @@
-#! /usr/bin/perl -w
use strict;
+use warnings;
use File::Copy;
my $cmd_string = join (" ",@ARGV);
diff -r 33381b9c268c -r bde3097ac0f6 macros.xml
--- a/macros.xml Mon Jan 28 14:49:47 2019 -0500
+++ b/macros.xml Tue Dec 03 02:12:56 2019 +0000
@@ -3,6 +3,7 @@
emboss
+ perl