Mercurial > repos > devteam > emboss_5
view emboss_plotorf.xml @ 20:21a9fb508031 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
author | iuc |
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date | Tue, 31 Aug 2021 08:05:39 +0000 |
parents | 27c43fb015f0 |
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<tool id="EMBOSS: plotorf76" name="plotorf" version="@VERSION@"> <!-- produces png file output --> <description>Plot potential open reading frames</description> <expand macro="bio_tools" /> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' plotorf -sequence '$input1' -graph png -goutfile '$out_file1' -start '$start' -stop '$stop' -auto</command> <inputs> <param name="input1" type="data" format="fasta" label="Sequence" /> <param name="start" type="text" value="ATG" label="Start codons" /> <param name="stop" type="text" value="TAA" label="Stop codons" /> </inputs> <outputs> <data name="out_file1" format="png" /> </outputs> <!-- <tests> <test> <param name="input1" value="2.fasta"/> <param name="start" value="ATG"/> <param name="stop" value="TAA"/> <output name="out_file1" file="emboss_plotorf_out.png"/> </test> </tests> --> <help> .. class:: warningmark The input dataset needs to be sequences. ----- You can view the original documentation here_. .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/plotorf.html </help> <expand macro="citations" /> </tool>