view emboss_wordcount.xml @ 15:dbd24c72f166 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit fed02ef07e0a45f0d5a89cdca364607ab8da6cf9

<tool id="EMBOSS: wordcount109" name="wordcount" version="@VERSION@.1">
  <description>Counts words of a specified size in a DNA sequence</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>wordcount -sequence '$input1' -outfile '$out_file1' -wordsize $wordsize -auto</command>
  <inputs>
    <param name="input1" type="data" format="fasta" label="Sequence" />
    <param name="wordsize" type="integer" value="4" label="Word size" />
  </inputs>
  <outputs>
    <data name="out_file1" format="wordcount" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <param name="wordsize" value="4"/>
      <output name="out_file1" file="emboss_wordcount_out.wordcount"/>
    </test>
  </tests>
  <help>
.. class:: warningmark

The input dataset needs to be sequences.

-----

    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/wordcount.html
  </help>
  <expand macro="citations" />
</tool>