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view emboss_prettyseq.xml @ 13:d5c3794bd246 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit ca9a6baaede679d619675e48d665748a91950115
author | iuc |
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date | Mon, 23 Apr 2018 13:04:47 -0400 |
parents | 0e2484b6829b |
children | 27c43fb015f0 |
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<tool id="EMBOSS: prettyseq80" name="prettyseq" version="5.0.0.1"> <description>Output sequence with translated ranges</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command>prettyseq -sequence '$input1' -outfile '$out_file1' -ruler $ruler -plabel $plabel -nlabel $nlabel -width $width -auto</command> <inputs> <param name="input1" type="data" format="fasta" label="Sequence" /> <param name="ruler" type="select" label="Add a ruler"> <option value="yes">Yes</option> <option value="no">No</option> </param> <param name="plabel" type="select" label="Number translations"> <option value="yes">Yes</option> <option value="no">No</option> </param> <param name="nlabel" type="select" label="Number DNA sequence"> <option value="yes">Yes</option> <option value="no">No</option> </param> <param name="width" type="integer" value="60" min="10" label="Width of screen" /> </inputs> <outputs> <data name="out_file1" format="prettyseq" /> </outputs> <tests> <test> <param name="input1" value="2.fasta"/> <param name="ruler" value="yes"/> <param name="plabel" value="yes"/> <param name="nlabel" value="yes"/> <param name="width" value="60"/> <output name="out_file1" file="emboss_prettyseq_out.prettyseq"/> </test> </tests> <help> .. class:: warningmark The input dataset needs to be sequences. ----- You can view the original documentation here_. .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/prettyseq.html </help> <expand macro="citations" /> </tool>