view emboss_pepinfo.xml @ 13:d5c3794bd246 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit ca9a6baaede679d619675e48d665748a91950115

<tool id="EMBOSS: pepinfo69" name="pepinfo" version="5.0.0.1">
  <!-- puts file info in output files -->
  <description>Plots simple amino acid properties in parallel</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' pepinfo -sequence '$input1' -outfile '$out_file1' -goutfile '$out_file2' -graph png -hwindow $hwindow $plot_type -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="Sequence" />
    <param name="hwindow" type="integer" value="9" label="Window size for hydropathy averaging" />
    <param name="plot_type" type="select" label="Choose a plot type">
      <option value="-generalplot yes -hydropathyplot no">Histogram of general properties</option>
      <option value="-generalplot no -hydropathyplot yes">Graphs of hydropathy</option>
    </param>
  </inputs>
  <outputs>
    <data name="out_file1" format="pepinfo" />
    <data name="out_file2" format="png" />
  </outputs>
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/pepinfo.html
  </help>
  <expand macro="citations" />
</tool>