view emboss_newcpgseek.xml @ 13:d5c3794bd246 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit ca9a6baaede679d619675e48d665748a91950115

<tool id="EMBOSS: newcpgseek58" name="newcpgseek" version="5.0.0.1">
  <description>Reports CpG rich region</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>newcpgseek -sequence '$input1' -outfile '$out_file1' -score $score -auto</command>
  <inputs>
    <param name="input1" type="data" format="fasta" label="Sequence" />
    <param name="score" type="integer" value="17" label="CpG score" />
  </inputs>
  <outputs>
    <data name="out_file1" format="newcpgseek" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <param name="score" value="17"/>
      <output name="out_file1" file="emboss_newcpgseek_out.newcpgseek"/>
    </test>
  </tests>
  <help>
.. class:: warningmark

The input dataset needs to be sequences.

-----

    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/newcpgseek.html
  </help>
  <expand macro="citations" />
</tool>