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view emboss_dotpath.xml @ 13:d5c3794bd246 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit ca9a6baaede679d619675e48d665748a91950115
author | iuc |
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date | Mon, 23 Apr 2018 13:04:47 -0400 |
parents | 0e2484b6829b |
children | 27c43fb015f0 |
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<tool id="EMBOSS: dotpath25" name="dotpath" version="5.0.0.1"> <description>Non-overlapping wordmatch dotplot of two sequences</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' dotpath -asequence '$input1' -bsequence '$input2' -goutfile '$out_file1' -wordsize $wordsize -overlaps $overlaps -boxit $boxit -graph png -auto</command> <inputs> <param name="input1" type="data" format="data" label="Sequence 1" /> <param name="input2" type="data" format="data" label="Sequence 2" /> <param name="wordsize" type="integer" min="2" value="4" label="Word size" /> <param name="overlaps" type="select" label="Display the overlapping matches (in red) as well as the minimal set of non-overlapping matches"> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="boxit" type="select" label="Draw a box around dotplot"> <option value="yes">Yes</option> <option value="no">No</option> </param> </inputs> <outputs> <data name="out_file1" format="png" /> </outputs> <!-- functional tests not possible since image output contains file name information and timestamp --> <help> You can view the original documentation here_. .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/dotpath.html </help> <expand macro="citations" /> </tool>