view emboss_pepstats.xml @ 19:d0847fe9b443 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 18de4aa9ba00124b1b3e3afe14219e46931e58a9"

<tool id="EMBOSS: pepstats71" name="pepstats" version="@VERSION@">
  <description>Protein statistics</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>pepstats -sequence '$input1' -outfile '$out_file1' -termini $termini -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="Sequence" />
    <param name="termini" type="select" label="Include charge at N and C terminus">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
  </inputs>
  <outputs>
    <data name="out_file1" format="pepstats" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <param name="termini" value="yes"/>
      <output name="out_file1" file="emboss_pepstats_out.pepstats"/>
    </test>
  </tests>
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/pepstats.html
  </help>
  <expand macro="citations" />
</tool>