Mercurial > repos > devteam > emboss_5
view emboss_polydot.xml @ 17:bde3097ac0f6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit d5dfff2cd58b094e0e4a6f8dc475de5facd9700b"
author | iuc |
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date | Tue, 03 Dec 2019 02:12:56 +0000 |
parents | 27c43fb015f0 |
children | 21a9fb508031 |
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<tool id="EMBOSS: polydot77" name="polydot" version="@VERSION@.1"> <!-- produces png file, not added functional tests --> <description>Displays all-against-all dotplots of a set of sequences</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' polydot -sequence '$input1' -graph png -goutfile '$output2' -outfeat '$output1' -wordsize $wordsize -boxit $boxit -dumpfeat yes -gap $gap -auto</command> <inputs> <param name="input1" type="data" format="fasta" label="Sequence" /> <param name="wordsize" type="integer" value="6" label="Word size" /> <param name="boxit" type="select" label="Draw a box around each dotplot"> <option value="yes">Yes</option> <option value="no">No</option> </param> <param name="gap" type="integer" value="10" label="Size of gap" /> </inputs> <outputs> <data name="output1" format="polydot" /> <data name="output2" format="png" /> </outputs> <!-- <tests> <test> <param name="input1" value="2.fasta"/> <param name="wordsize" value="6"/> <param name="boxit" value="yes"/> <param name="gap" value="10"/> <output name="output1" file="emboss_polydot_out.png"/> </test> </tests>--> <help> .. class:: warningmark The input dataset needs to be sequences. ----- You can view the original documentation here_. .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/polydot.html </help> <expand macro="citations" /> </tool>