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view emboss_plotcon.xml @ 17:bde3097ac0f6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit d5dfff2cd58b094e0e4a6f8dc475de5facd9700b"
author iuc
date Tue, 03 Dec 2019 02:12:56 +0000
parents 27c43fb015f0
children 21a9fb508031
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<tool id="EMBOSS: plotcon75" name="plotcon" version="@VERSION@.1">
  <!-- produces png file -->
  <description>Plot quality of conservation of a sequence alignment</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' plotcon -sequences '$input1' -graph png -goutfile '$out_file1' -winsize $winsize -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="Sequence" />
    <param name="winsize" type="integer" value="4" label="Number of columns to average alignment quality over" />
  </inputs>
  <outputs>
    <data name="out_file1" format="png" />
  </outputs>
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/plotcon.html
  </help>
  <expand macro="citations" />
</tool>