Mercurial > repos > devteam > emboss_5
view emboss_compseq.xml @ 17:bde3097ac0f6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit d5dfff2cd58b094e0e4a6f8dc475de5facd9700b"
author | iuc |
---|---|
date | Tue, 03 Dec 2019 02:12:56 +0000 |
parents | 27c43fb015f0 |
children | 21a9fb508031 |
line wrap: on
line source
<tool id="EMBOSS: compseq14" name="compseq" version="@VERSION@.1"> <description>Count composition of dimer/trimer/etc words in a sequence</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command>compseq -sequence '$input1' -outfile '$out_file1' -word $word -frame $frame -auto</command> <inputs> <param name="input1" type="data" format="fasta" label="On query" /> <param name="word" type="integer" value="2" label="Size of word (window) to count" /> <param name="frame" type="select" label="Frame to inspect"> <option value="0">All Frames</option> <option value="1">Frame 1</option> <option value="2">Frame 2</option> <option value="3">Frame 3</option> </param> </inputs> <outputs> <data name="out_file1" format="compseq" /> </outputs> <tests> <test> <param name="input1" value="2.fasta"/> <param name="word" value="2"/> <param name="frame" value="0"/> <output name="out_file1" file="emboss_compseq_out.compseq"/> </test> </tests> <help> .. class:: warningmark The input dataset needs to be sequences. ----- You can view the original documentation here_. .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/compseq.html </help> <expand macro="citations" /> </tool>