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view emboss_preg.xml @ 12:ace31bbde4c0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 9d484642914b581ce35f254466b849d3c4c2c06c
author iuc
date Thu, 23 Feb 2017 09:43:32 -0500
parents 0e2484b6829b
children 27c43fb015f0
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<tool id="EMBOSS: preg78" name="preg" version="5.0.0">
  <description>Regular expression search of a protein sequence</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>preg -sequence '$input1' -outfile '$out_file1' -pattern '$pattern' -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="Sequence" />
    <param name="pattern" type="text" value="(ACD)" label="Regular expression pattern" />
  </inputs>
  <outputs>
    <data name="out_file1" format="preg" />
  </outputs>
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/preg.html
  </help>
  <expand macro="citations" />
</tool>