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view test-data/emboss_compseq_out.compseq @ 10:9b98d3d903c6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit fc158bfe5f5927dc199321a2cf43310373cbc8ba
author devteam
date Fri, 12 Aug 2016 19:17:10 -0400
parents a74a91f0ca4a
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#
# Output from 'compseq'
#
# The Expected frequencies are calculated on the (false) assumption that every
# word has equal frequency.
#
# The input sequences are:
#	Sequence


Word size	2
Total count	560

#
# Word	Obs Count	Obs Frequency	Exp Frequency	Obs/Exp Frequency
#
AA	40		0.0714286	0.0625000	1.1428571
AC	27		0.0482143	0.0625000	0.7714286
AG	26		0.0464286	0.0625000	0.7428571
AT	41		0.0732143	0.0625000	1.1714286
CA	26		0.0464286	0.0625000	0.7428571
CC	24		0.0428571	0.0625000	0.6857143
CG	15		0.0267857	0.0625000	0.4285714
CT	41		0.0732143	0.0625000	1.1714286
GA	19		0.0339286	0.0625000	0.5428571
GC	17		0.0303571	0.0625000	0.4857143
GG	19		0.0339286	0.0625000	0.5428571
GT	43		0.0767857	0.0625000	1.2285714
TA	50		0.0892857	0.0625000	1.4285714
TC	38		0.0678571	0.0625000	1.0857143
TG	37		0.0660714	0.0625000	1.0571429
TT	97		0.1732143	0.0625000	2.7714286

Other	0		0.0000000	0.0000000	10000000000.0000000