Mercurial > repos > devteam > emboss_5
view emboss_octanol.xml @ 10:9b98d3d903c6 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit fc158bfe5f5927dc199321a2cf43310373cbc8ba
author | devteam |
---|---|
date | Fri, 12 Aug 2016 19:17:10 -0400 |
parents | |
children | 0e2484b6829b |
line wrap: on
line source
<tool id="EMBOSS: octanol63" name="octanol" version="5.0.0"> <!-- graphics output with filename, no functional tests added --> <description>Displays protein hydropathy</description> <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> <command interpreter="perl">emboss_single_outputfile_wrapper.pl octanol -sequence $input1 -graph png -goutfile $out_file1 -width $width -octanolplot $octanolplot -interfaceplot $interfaceplot -differenceplot $differenceplot -auto</command> <inputs> <param format="data" name="input1" type="data"> <label>Sequences</label> </param> <param name="width" type="text" value="19"> <label>Window size</label> </param> <param name="octanolplot" type="select"> <label>Display the octanol plot</label> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="interfaceplot" type="select"> <label>Display the interface plot</label> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="differenceplot" type="select"> <label>Display the difference plot</label> <option value="yes">Yes</option> <option value="no">No</option> </param> </inputs> <outputs> <data format="png" name="out_file1" /> </outputs> <help> You can view the original documentation here_. .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/octanol.html ------ **Citation** For the underlying tool, please cite `Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7. <http://www.ncbi.nlm.nih.gov/pubmed/10827456>`_ If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. <http://www.ncbi.nlm.nih.gov/pubmed/17568012>`_ </help> </tool>