Mercurial > repos > devteam > emboss_5
view emboss_primersearch.xml @ 16:33381b9c268c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
author | iuc |
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date | Mon, 28 Jan 2019 14:49:47 -0500 |
parents | 27c43fb015f0 |
children | 21a9fb508031 |
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<tool id="EMBOSS: primersearch81" name="primersearch" version="@VERSION@.1"> <description>Searches DNA sequences for matches with primer pairs</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command>primersearch -seqall '$input1' -infile '$input2' -outfile '$out_file1' -mismatchpercent $mismatchpercent -auto</command> <inputs> <param name="input1" type="data" format="fasta" label="Main sequences" /> <param name="input2" type="data" format="data" label="Primer file" /> <param name="mismatchpercent" type="integer" value="0" label="Allowed percent mismatch" /> </inputs> <outputs> <data name="out_file1" format="primersearch" /> </outputs> <tests> <test> <param name="input1" value="2.fasta"/> <param name="input2" value="emboss_primersearch.fasta"/> <param name="mismatchpercent" value="0"/> <output name="out_file1" file="emboss_primersearch_out.primersearch"/> </test> </tests> <help> You can view the original documentation here_. .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/primersearch.html </help> <expand macro="citations" /> </tool>