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view emboss_antigenic.xml @ 16:33381b9c268c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
author | iuc |
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date | Mon, 28 Jan 2019 14:49:47 -0500 |
parents | 27c43fb015f0 |
children | 21a9fb508031 |
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<tool id="EMBOSS: antigenic1" name="antigenic" version="@VERSION@.1"> <description>Predicts potentially antigenic regions of a protein sequence, using the method of Kolaskar and Tongaonkar.</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <code file="emboss_format_corrector.py" /> <command>antigenic -sequence '$input1' -outfile '$out_file1' -minlen $minlen -rformat2 $out_format1 -auto</command> <inputs> <param name="input1" type="data" format="data" label="On query" /> <param name="minlen" type="integer" value="6" label="Minimum length of region" /> <param name="out_format1" type="select" label="Output format"> <option value="gff">GFF</option> <option value="pir">PIR</option> <option value="swiss">SwissProt</option> <option value="dbmotif">DbMotif</option> <option value="diffseq">diffseq</option> <option value="excel">Excel (TAB Delimited)</option> <option value="feattable">FeatTable</option> <option value="motif">Motif</option> <option value="nametable">NameTable</option> <option value="regions">Regions</option> <option value="seqtable">SeqTable</option> <option value="simple">SRS simple</option> <option value="srs">SRS</option> <option value="table">Table</option> <option value="tagseq">Tagseq</option> <option value="antigenic">Antigenic Output File</option> </param> </inputs> <outputs> <data name="out_file1" format="antigenic" /> </outputs> <tests> <test> <param name="input1" value="2.fasta"/> <param name="minlen" value="6"/> <param name="out_format1" value="excel"/> <output name="out_file1" file="emboss_antigenic_out.tabular"/> </test> </tests> <help> You can view the original documentation here_. .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/antigenic.html </help> <expand macro="citations" /> </tool>