view emboss_cusp.xml @ 14:27c43fb015f0 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 9844cae766e7471d9fa6b2e8356e5194e77f6753

<tool id="EMBOSS: cusp17" name="cusp" version="@VERSION@">
  <description>Create a codon usage table</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>cusp -sequence '$input1' -outfile '$out_file1' -auto</command>
  <inputs>
    <param name="input1" type="data" format="fasta" label="On query" />
  </inputs>
  <outputs>
    <data name="out_file1" format="cusp" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <output name="out_file1" file="emboss_cusp_out.cusp"/>
    </test>
  </tests>
  <help>
.. class:: warningmark

The input dataset needs to be sequences.

-----

    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/cusp.html
  </help>
  <expand macro="citations" />
</tool>