Mercurial > repos > devteam > emboss_5
view emboss_tmap.xml @ 11:0e2484b6829b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
author | iuc |
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date | Mon, 30 Jan 2017 13:27:40 -0500 |
parents | 9b98d3d903c6 |
children | 27c43fb015f0 |
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<tool id="EMBOSS: tmap99" name="tmap" version="5.0.0"> <description>Displays membrane spanning regions</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <code file="emboss_format_corrector.py" /> <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' tmap -sequences '$input1' -outfile '$out_file1' -goutfile '$out_file2' -graph png -rformat $out_format1 -auto</command> <inputs> <param name="input1" type="data" format="data" label="Sequence" /> <param name="out_format1" type="select" label="Output report file format"> <option value="seqtable ">SeqTable</option> <option value="embl">EMBL</option> <option value="genbank">GENBANK</option> <option value="gff">GFF</option> <option value="pir">PIR</option> <option value="swiss">SwissProt</option> <option value="dbmotif">DbMotif</option> <option value="diffseq">Diffseq</option> <option value="excel">Excel (tab delimited)</option> <option value="feattable">FeatTable</option> <option value="motif">Motif</option> <option value="regions">Regions</option> <option value="simple">SRS Simple</option> <option value="srs">SRS</option> <option value="table">Table</option> <option value="tagseq">TagSeq</option> </param> </inputs> <outputs> <data name="out_file1" format="seqtable" /> <data name="out_file2" format="png" /> </outputs> <help> You can view the original documentation here_. .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/tmap.html </help> <expand macro="citations" /> </tool>