Mercurial > repos > devteam > emboss_5

view emboss_plotcon.xml @ 11:0e2484b6829b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
author iuc
date Mon, 30 Jan 2017 13:27:40 -0500
parents 9b98d3d903c6
children 27c43fb015f0
line wrap: on
line source

<tool id="EMBOSS: plotcon75" name="plotcon" version="5.0.0.1">
  <!-- produces png file -->
  <description>Plot quality of conservation of a sequence alignment</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' plotcon -sequences '$input1' -graph png -goutfile '$out_file1' -winsize $winsize -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="Sequence" />
    <param name="winsize" type="integer" value="4" label="Number of columns to average alignment quality over" />
  </inputs>
  <outputs>
    <data name="out_file1" format="png" />
  </outputs>
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/plotcon.html
  </help>
  <expand macro="citations" />
</tool>