Mercurial > repos > devteam > emboss_5
diff test-data/emboss_compseq_out.compseq @ 1:a74a91f0ca4a
Uploaded emboss_testdata.tar
| author | devteam |
|---|---|
| date | Tue, 05 Jun 2012 14:00:15 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/emboss_compseq_out.compseq Tue Jun 05 14:00:15 2012 -0400 @@ -0,0 +1,34 @@ +# +# Output from 'compseq' +# +# The Expected frequencies are calculated on the (false) assumption that every +# word has equal frequency. +# +# The input sequences are: +# Sequence + + +Word size 2 +Total count 560 + +# +# Word Obs Count Obs Frequency Exp Frequency Obs/Exp Frequency +# +AA 40 0.0714286 0.0625000 1.1428571 +AC 27 0.0482143 0.0625000 0.7714286 +AG 26 0.0464286 0.0625000 0.7428571 +AT 41 0.0732143 0.0625000 1.1714286 +CA 26 0.0464286 0.0625000 0.7428571 +CC 24 0.0428571 0.0625000 0.6857143 +CG 15 0.0267857 0.0625000 0.4285714 +CT 41 0.0732143 0.0625000 1.1714286 +GA 19 0.0339286 0.0625000 0.5428571 +GC 17 0.0303571 0.0625000 0.4857143 +GG 19 0.0339286 0.0625000 0.5428571 +GT 43 0.0767857 0.0625000 1.2285714 +TA 50 0.0892857 0.0625000 1.4285714 +TC 38 0.0678571 0.0625000 1.0857143 +TG 37 0.0660714 0.0625000 1.0571429 +TT 97 0.1732143 0.0625000 2.7714286 + +Other 0 0.0000000 0.0000000 10000000000.0000000