diff emboss_single_outputfile_wrapper.pl @ 10:9b98d3d903c6 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit fc158bfe5f5927dc199321a2cf43310373cbc8ba

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/emboss_single_outputfile_wrapper.pl	Fri Aug 12 19:17:10 2016 -0400
@@ -0,0 +1,27 @@
+#! /usr/bin/perl -w
+use strict;
+use File::Copy;
+
+my $cmd_string = join (" ",@ARGV);
+my $results = `$cmd_string`;
+my @files = split("\n",$results);
+my $fileNameOut = $ARGV[6];
+my ($drive, $outputDir, $file) = File::Spec->splitpath( $fileNameOut );
+my $destination = $fileNameOut;
+
+foreach my $thisLine (@files)
+{
+	if ($thisLine =~ /Created /)
+	{
+		$thisLine =~ /[\w|\.]+$/;
+		$thisLine =$&;
+		#print "outfile: $thisLine\n";
+		#there is only one file to move, so we can quit after finding it
+		move($drive.$outputDir.$thisLine,$fileNameOut);
+		exit(1);
+	}
+	else
+	{
+		print $thisLine,"\n";
+	}
+}