Mercurial > repos > devteam > emboss_5
diff emboss_pepwindowall.xml @ 11:0e2484b6829b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
author | iuc |
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date | Mon, 30 Jan 2017 13:27:40 -0500 |
parents | 9b98d3d903c6 |
children | 27c43fb015f0 |
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--- a/emboss_pepwindowall.xml Fri Aug 12 19:17:10 2016 -0400 +++ b/emboss_pepwindowall.xml Mon Jan 30 13:27:40 2017 -0500 @@ -1,30 +1,22 @@ -<tool id="EMBOSS: pepwindowall74" name="pepwindowall" version="5.0.0"> +<tool id="EMBOSS: pepwindowall74" name="pepwindowall" version="5.0.0.1"> <!-- produces png file --> - <description>Displays protein hydropathy of a set of sequences</description> - <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> - <command interpreter="perl">emboss_single_outputfile_wrapper.pl pepwindowall -sequence $input1 -graph png -goutfile $out_file1 -length $length -auto</command> - <inputs> - <param format="data" name="input1" type="data"> - <label>Sequence</label> - </param> - <param name="length" type="text" value="7"> - <label>Window size</label> - </param> - </inputs> - <outputs> - <data format="png" name="out_file1" /> - </outputs> + <description>Displays protein hydropathy of a set of sequences</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' pepwindowall -sequence '$input1' -graph png -goutfile '$out_file1' -length $length -auto</command> + <inputs> + <param name="input1" type="data" format="data" label="Sequence" /> + <param name="length" type="integer" value="7" label="Window size" /> + </inputs> + <outputs> + <data name="out_file1" format="png" /> + </outputs> <help> You can view the original documentation here_. - - .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/pepwindowall.html - ------- - -**Citation** -For the underlying tool, please cite `Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7. <http://www.ncbi.nlm.nih.gov/pubmed/10827456>`_ - -If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. <http://www.ncbi.nlm.nih.gov/pubmed/17568012>`_ + .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/pepwindowall.html </help> -</tool> \ No newline at end of file + <expand macro="citations" /> +</tool>