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comparison test-data/emboss_compseq_out.compseq @ 1:a74a91f0ca4a

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Uploaded emboss_testdata.tar
author devteam
date Tue, 05 Jun 2012 14:00:15 -0400
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0:d3a9c3114f2c 1:a74a91f0ca4a
1 #
2 # Output from 'compseq'
3 #
4 # The Expected frequencies are calculated on the (false) assumption that every
5 # word has equal frequency.
6 #
7 # The input sequences are:
8 # Sequence
9
10
11 Word size 2
12 Total count 560
13
14 #
15 # Word Obs Count Obs Frequency Exp Frequency Obs/Exp Frequency
16 #
17 AA 40 0.0714286 0.0625000 1.1428571
18 AC 27 0.0482143 0.0625000 0.7714286
19 AG 26 0.0464286 0.0625000 0.7428571
20 AT 41 0.0732143 0.0625000 1.1714286
21 CA 26 0.0464286 0.0625000 0.7428571
22 CC 24 0.0428571 0.0625000 0.6857143
23 CG 15 0.0267857 0.0625000 0.4285714
24 CT 41 0.0732143 0.0625000 1.1714286
25 GA 19 0.0339286 0.0625000 0.5428571
26 GC 17 0.0303571 0.0625000 0.4857143
27 GG 19 0.0339286 0.0625000 0.5428571
28 GT 43 0.0767857 0.0625000 1.2285714
29 TA 50 0.0892857 0.0625000 1.4285714
30 TC 38 0.0678571 0.0625000 1.0857143
31 TG 37 0.0660714 0.0625000 1.0571429
32 TT 97 0.1732143 0.0625000 2.7714286
33
34 Other 0 0.0000000 0.0000000 10000000000.0000000